PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003531
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 388aa    MW: 43857.1 Da    PI: 7.1154
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55336431PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-25660PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.4e-52121391128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrF Ptd+elvv+yL++k++++ + +  +i+evd+yk++Pw+Lp+k+  +ekewyfF++rd+ky++g+r+nra+ sgyWkatg dk++++k +++ 
  Pgl003531  12 LPPGFRFFPTDDELVVHYLCRKAASQAIAV-PIIAEVDLYKFDPWQLPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPITAKgSNKR 110
                79*************************999.88***************8888899***************************************966677 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kk Lvfy g+apkg+kt+W+mheyrl
  Pgl003531 111 VGIKKALVFYVGKAPKGNKTNWIMHEYRL 139
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-638165IPR003441NAC domain
PROSITE profilePS5100560.46712165IPR003441NAC domain
PfamPF023651.3E-2613139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGRPNAEAQL NLPPGFRFFP TDDELVVHYL CRKAASQAIA VPIIAEVDLY KFDPWQLPEK  60
ALFGEKEWYF FTPRDRKYPN GSRPNRAAGS GYWKATGADK PITAKGSNKR VGIKKALVFY  120
VGKAPKGNKT NWIMHEYRLA DVNRSAKKKG SLRLGDWVLC RIYNKKSSAE KLAKEQKEWS  180
SEEAMEQFHE EIDEKVPRIL PTGNTIMNSS IEHSERTSQD STISAPSPNC RTASTNHDSR  240
ASAITSLSYN SNPIFEQNLN LSNASSAPME IPELVPFFSS MNNRRTNYDS ADLIPPILLT  300
DSSCSMQSSH DLKSEKEEVQ SSFRLEELMQ QQQQENAGLN QQMFSFGFES LQNPFPSLDQ  360
IQPPTNNDPF QDYLASLTVP SYLQRSSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-8751718174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.90600.0needle| root| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020254522.11e-100LOW QUALITY PROTEIN: NAC domain-containing protein 68-like
TrEMBLA9NZG80.0A9NZG8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.15e-95NAC family protein