PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl003453

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 393aa MW: 44440.8 Da PI: 6.5693

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55335803	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-8385	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.4	4.6e-56	16	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeelv++yL +kv +++++ +i+evd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkdkev+++ +++l Pgl003453 16 LPPGFRFHPTDEELVSCYLVRKVLDNSFSG-IAIAEVDLNKCEPWDLPVKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDKEVFKAhTDRL 114 79***********************999.88***********99999************************************9867788 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 +g+kktLvfy+grapkgekt+Wvmheyrle Pgl003453 115 IGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 144 **************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-63	10	168	IPR003441	NAC domain
PROSITE profile	PS51005	59.585	16	168	IPR003441	NAC domain
Pfam	PF02365	4.6E-29	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MGSSSRSSGN TGEEGLPPGF RFHPTDEELV SCYLVRKVLD NSFSGIAIAE VDLNKCEPWD 60 LPVKAKMGEK EWYFFSLRDR KYPTGLRTNR ATEAGYWKAT GKDKEVFKAH TDRLIGMKKT 120 LVFYRGRAPK GEKTNWVMHE YRLEGQLSYH QLSKNCKDEW VVCRINHKNS GGKKITPGLI 180 NRNFYSDECL GSHSLPALLE SPTYATRAMH NEETELSDMA NIHLCNNNNI LPNDPQFNLN 240 MRTANPTSCI FSQMSSNGSF SGVPSQMGLP SNPILMALAE QYSVSELNLK QCKMEPSSSG 300 ANNDNSLKIS HEEQWNMGRT RHDQQQQINI ENNGISYTPT METHGIDPQD HTAMCLNPDQ 360 MNPVMFNRET RPYQLDHSAE AAPTLDLDSL WAY

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MGSSSRSSGN TGEEGLPPGF RFHPTDEELV SCYLVRKVLD NSFSGIAIAE VDLNKCEPWD  60
LPVKAKMGEK EWYFFSLRDR KYPTGLRTNR ATEAGYWKAT GKDKEVFKAH TDRLIGMKKT  120
LVFYRGRAPK GEKTNWVMHE YRLEGQLSYH QLSKNCKDEW VVCRINHKNS GGKKITPGLI  180
NRNFYSDECL GSHSLPALLE SPTYATRAMH NEETELSDMA NIHLCNNNNI LPNDPQFNLN  240
MRTANPTSCI FSQMSSNGSF SGVPSQMGLP SNPILMALAE QYSVSELNLK QCKMEPSSSG  300
ANNDNSLKIS HEEQWNMGRT RHDQQQQINI ENNGISYTPT METHGIDPQD HTAMCLNPDQ  360
MNPVMFNRET RPYQLDHSAE AAPTLDLDSL WAY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	7e-54	16	174	20	174	NAC domain-containing protein 19
3swm_B	7e-54	16	174	20	174	NAC domain-containing protein 19
3swm_C	7e-54	16	174	20	174	NAC domain-containing protein 19
3swm_D	7e-54	16	174	20	174	NAC domain-containing protein 19
3swp_A	7e-54	16	174	20	174	NAC domain-containing protein 19
3swp_B	7e-54	16	174	20	174	NAC domain-containing protein 19
3swp_C	7e-54	16	174	20	174	NAC domain-containing protein 19
3swp_D	7e-54	16	174	20	174	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.3409	0.0	vegetative bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269\|PubMed:17098808}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021620729.1	7e-96	NAC domain-containing protein 100-like
Swissprot	Q9FLR3	3e-88	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	G8CPZ1	0.0	G8CPZ1_PICAB; NAC-domain containing protein 2
STRING	cassava4.1_010179m	3e-95	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.2	2e-90	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]