PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003236
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 408aa    MW: 46202.4 Da    PI: 5.6243
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55334021PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-19990PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.41.2e-201053245
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
               r e + nrq+tfskRrngi+KKA+EL +LCd+++++++fs++gk
  Pgl003236 10 RLEHNNNRQITFSKRRNGIIKKAKELAILCDIDILLMMFSPSGK 53
               568899************************************97 PP
2K-box17.71.5e-07112200591
      K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqq...LeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                s+++le+ + ++l++el++++ ++ nL+++   +  +++++ ++ +L q   +e++L ++l ++R +K+ l  +qi +  ++ ++l ++n
  Pgl003236 112 SSEKLEKLEVQELHNELTRIQTKVLNLREK-TWYFRDEINETNILNLDQardVEERLMEALGRVRMRKEALKNDQILTPAERSEKLYHNN 200
                455689999*******************98.7888899998776666543339***********************99999888887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.712153IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-28160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-25294IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-17323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-201155IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGRMKLAIRR LEHNNNRQIT FSKRRNGIIK KAKELAILCD IDILLMMFSP SGKPTVCVGE  60
KSVMEDVIAK FCELTPQERC KRKLESLEVL KKTFKRLDHD VNIDDFLGER CSSEKLEKLE  120
VQELHNELTR IQTKVLNLRE KTWYFRDEIN ETNILNLDQA RDVEERLMEA LGRVRMRKEA  180
LKNDQILTPA ERSEKLYHNN ICFPSAPEGT EQSQPMSWMP TDGQLFMVHE DPTLGLSQRD  240
VNCAADASAP VPSGFMYNCK HANMEDTSSQ LATFSNPLNR CGLSLHLEYQ GSSYHPDCQY  300
TCSDVTEEKE SKPELSLQGT TAVYDTQSIG MGFDGLHQQW SSSCNHVVGS LFDTCLDSWK  360
QSMPMFGSAS ASTSHQMNTC EQVEQPLGTQ MQAAYECHAG ASCISSLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-12192190MEF2 CHIMERA
6byy_B3e-12192190MEF2 CHIMERA
6byy_C3e-12192190MEF2 CHIMERA
6byy_D3e-12192190MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A8M01e-177D5A8M0_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.13e-61AGAMOUS-like 65