PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003180
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 412aa    MW: 44767.6 Da    PI: 8.4946
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55345507PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-27512PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.3e-35251172103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k+ll++i+
     Pgl003180  25 FLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRKGEKHLLCEIH 112
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
     Pgl003180 113 RRKTS 117
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-3816109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.26E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MTLLLDSCEG MLLSVESHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF RKGEKHLLCE IHRRKTSSQA  120
VPSSGHGMPM SSSISPTTSD DQDWSPLSTP LSSPRGLAAA TGGGGGGGSL MVGCSGGGTA  180
AMHASAAAAA AAVSALSDDN ERLRRNNSML LSELTHMRKL YNDIIFFVQH HVRIPPPPPH  240
QGGSSSSAMN MNMNRLKYHQ QPTANPNVVP LLLEAPTVPS TPRIADARDH RIMNPNREVV  300
EISSSSPRSQ LFGLGTARAS SISFVDTKLK EMAAASSSPS TSSVTVADQD GIKSPPKLFG  360
VPLHGKKRLH PQWDVVDQAE TNSLQEQYRN IIVAPSKALK TDLALHLAPS SA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A2e-22211167112Heat shock factor protein 1
5hdn_A2e-22211167112Heat shock factor protein 1
5hdn_B2e-22211167112Heat shock factor protein 1
5hdn_C2e-22211167112Heat shock factor protein 1
5hdn_D2e-22211167112Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.83600.0stem| vegetative bud
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112180.11e-115heat stress transcription factor B-4
SwissprotQ9C6351e-87HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLW9SA361e-114W9SA36_9ROSA; Heat stress transcription factor B-4
STRINGXP_010112180.11e-114(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-67heat shock transcription factor B4