PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl003179 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C3H | ||||||||||||
Protein Properties | Length: 412aa MW: 42879.6 Da PI: 6.6973 | ||||||||||||
Description | C3H family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.1 | 2.4e-06 | 153 | 175 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +Cr++ C+yG +C++ Hgp Pgl003179 153 ECRRYKTDDGCPYGLNCRYKHGP 175 6********************96 PP | |||||||
2 | zf-CCCH | 18.8 | 2.9e-06 | 191 | 214 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 kt++C+ f+ t C+yG+ C+F+H Pgl003179 191 KTKPCMKFFSTSGCPYGEGCHFSH 214 9*********************** PP | |||||||
3 | zf-CCCH | 30.7 | 5.2e-10 | 256 | 282 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC++f C++Gd+C+FaHg+ Pgl003179 256 YKTRLCNRFNTEEGCRFGDKCHFAHGE 282 9************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.2 | 150 | 175 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.479 | 153 | 176 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.81E-5 | 153 | 178 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-5 | 154 | 179 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-8 | 188 | 214 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.77 | 189 | 216 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 189 | 215 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.882 | 189 | 217 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-4 | 191 | 214 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-4 | 255 | 282 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-15 | 255 | 287 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.821 | 255 | 283 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-9 | 256 | 286 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-7 | 256 | 282 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MESFEPMLKK PRGYDTDGSN GMTWTSSSSG GNINMNMNPG MNLSSGVNYQ SGPNPNQGHG 60 FNPNAAVANP NPNPNPNPGV NEVIPGPPQG GYPPAMGGGS YGGSYGGGSG GSYGGGSYGG 120 GSYENGNHSN HFEGLGFQQQ QRQGSNTNVG DLECRRYKTD DGCPYGLNCR YKHGPTDERD 180 FNIQISSSGS KTKPCMKFFS TSGCPYGEGC HFSHYFVGGI TAIGLAPVQT MPAATMAPPR 240 KQSGPSVDPS ATISGYKTRL CNRFNTEEGC RFGDKCHFAH GESDLRSLSN IRTSNRNGVP 300 MQSAPAMYDN GPPATVSNPA GFVDTTAYGN SASSNAYGNS AATTAYGSSA VYSANTFPSS 360 QSYAEPTPPG VAANTPFVAN YNMPVENSSQ LAGIEGTMQG GPVTGTNNVQ VY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 121 | SGGSYGGGSYGGGS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.18108 | 0.0 | needle| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010247477.1 | 1e-61 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
TrEMBL | A0A0C9RL80 | 1e-112 | A0A0C9RL80_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_12684_1767 transcribed RNA sequence | ||||
STRING | XP_010247477.1 | 4e-61 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-11 | C3H family protein |