PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl003143 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | AP2 | ||||||||||||
Protein Properties | Length: 415aa MW: 46071.3 Da PI: 5.992 | ||||||||||||
Description | AP2 family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.4 | 1.5e-07 | 8 | 40 | 26 | 55 |
AP2 26 g...krkrfslgkfgtaeeAakaaiaarkkleg 55 g k ++++lg ++ +e+Aa+a++ a++k++g Pgl003143 8 GqtrKGRQVYLGGYDKEEKAARAYDLAALKYWG 40 335344*************************98 PP | |||||||
2 | AP2 | 48.2 | 2.7e-15 | 83 | 134 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Pgl003143 83 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 134 78****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.339 | 1 | 48 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-12 | 5 | 54 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-5 | 8 | 40 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.32E-14 | 8 | 48 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-11 | 10 | 50 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-11 | 11 | 49 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-10 | 83 | 134 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-18 | 83 | 144 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.16E-25 | 83 | 144 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-18 | 84 | 142 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-33 | 84 | 148 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.913 | 84 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
XNSCRKEGQT RKGRQVYLGG YDKEEKAARA YDLAALKYWG PSTHINFPLE TYEKEIEEMK 60 NMTRQEYVAN LRRKSSGFSR GASVYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE 120 AAEAYDIAAI KFRGISAVTN FDISKYDVQR ICSSSTLIAG DLAKRTKEIE QSSEPSGDSP 180 LQVEAAPLQI EAAHNSQSRS HNDNAKDGNN STSNDSNHNN NVVGSISDKI AQDWQLMDSN 240 SDQDQHKVFN NWVVEHEDRK PDQSFIESLQ LGPHSHSAVL HDLIGLDSST AADSDQSNNE 300 ETSRLLTDIS GGNNSLLTMS NASNTGPVES PVNSASENEE GHHRKIPVYD NMMPAGEFPQ 360 ALFFSSPQQA SKLVKYENGS TTLSPWMIPP NTVQPLQSRP NLSVGHLPMF ALWNE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.23197 | 0.0 | stem| vegetative bud |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010061622.1 | 1e-112 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X1 | ||||
TrEMBL | Q76H96 | 0.0 | Q76H96_PINTH; AINTEGUMENTA-like protein | ||||
STRING | XP_010061621.1 | 1e-111 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 3e-97 | AP2 family protein |