PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003058
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 421aa    MW: 47368.6 Da    PI: 6.4511
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55351414PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-20802PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS432.82.6e-132564214374
       GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
                lL+ecA+a+++  +++a++l+a+l++ +s  gdp++Rl ay++e+L a+l+ s+ ++yk+l+++e +   s+e l+++++f++v+P++kf++++aN aI+
  Pgl003058  56 LLIECAKAIAD--NRNADKLIAKLRQAVSIFGDPIERLGAYMVEGLVAKLQFSGGHIYKTLKCKEPT---SAELLSYMQVFYKVCPYFKFGYMAANGAIV 150
                8********86..789**************************************************9...9***************************** PP

       GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
                ea++ ++rvHiiDf+i qG QW++ +qa+a+R++g+p++RiTgv++p s+  + + l+ +g+rL+k+Ae+ +vpfef++l     +d++ ++L+++pgEa
  Pgl003058 151 EAFNDKDRVHIIDFQIAQGSQWVTVIQAFAARQGGSPHVRITGVDDPVSEfaRGQGLQLVGQRLSKLAETYQVPFEFHAL-PVFASDVHADMLDIRPGEA 249
                ***********************************************99999***************************6.77899************** PP

       GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                laVn++l lh+++desvs++++rd+++++vk+l P+vv++veqe+++n+++F+ rfle+l+yy+a+f+sl+ +lpres++r++vE+++l+r+ivnv+ace
  Pgl003058 250 LAVNFHLLLHHIPDESVSTSNHRDRLIRMVKGLAPTVVTLVEQESNTNTSRFFPRFLETLSYYTAMFESLDLTLPRESKDRVSVEQHCLARDIVNVIACE 349
                **************************************************************************************************** PP

       GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                gaer+erhe ++kWr+r+++aGFk+ +ls+++++++k  l+ ++++ yrv e+++ l+lgW +r L+++SaW+
  Pgl003058 350 GAERVERHEPFGKWRSRFTMAGFKSHALSSRVNSTIKVALESYNQN-YRVVEKDEVLYLGWLGRDLFVASAWK 421
                ********************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.79927402IPR005202Transcription factor GRAS
PfamPF035149.1E-13056421IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
XRPANFKISE EIATALLRTN SDDPSNMEDV YGDHNLPSNS EWSPESEIPQ GDIKCLLIEC  60
AKAIADNRNA DKLIAKLRQA VSIFGDPIER LGAYMVEGLV AKLQFSGGHI YKTLKCKEPT  120
SAELLSYMQV FYKVCPYFKF GYMAANGAIV EAFNDKDRVH IIDFQIAQGS QWVTVIQAFA  180
ARQGGSPHVR ITGVDDPVSE FARGQGLQLV GQRLSKLAET YQVPFEFHAL PVFASDVHAD  240
MLDIRPGEAL AVNFHLLLHH IPDESVSTSN HRDRLIRMVK GLAPTVVTLV EQESNTNTSR  300
FFPRFLETLS YYTAMFESLD LTLPRESKDR VSVEQHCLAR DIVNVIACEG AERVERHEPF  360
GKWRSRFTMA GFKSHALSSR VNSTIKVALE SYNQNYRVVE KDEVLYLGWL GRDLFVASAW  420
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-625942025378Protein SCARECROW
5b3h_A3e-625942024377Protein SCARECROW
5b3h_D3e-625942024377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.62010.0stem
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029116878.10.0scarecrow-like protein 21
RefseqXP_029116879.10.0scarecrow-like protein 21
SwissprotQ8GVE11e-179CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
SwissprotQ9LDL71e-179PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0B4U8K10.0A0A0B4U8K1_PINRA; SCL10
STRINGXP_008800637.10.0(Phoenix dactylifera)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]
  6. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]