PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl002938
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 429aa    MW: 48117.5 Da    PI: 4.8935
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55333168PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-13217PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.52.7e-32561901128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                lp+G++F+P+d+el+  +L++kv   +      ++++   +ke  +i++++P++Lp  vk++ + ++fF++++k+y+tg+rk+r++++ +W++tgk+++ 
  Pgl002938  56 LPAGVKFDPSDQELM-GHLAAKVGVGNskshplIDEFIPtLKEDdGICYSHPENLP-GVKQDGSVCHFFHRTAKAYHTGNRKRRKIQEDRWHKTGKTRPA 153
                799************.789999877774565443333333555546**********.777888999********************************** PP

        NAM  93 lskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 + +g + g kk+Lv+y  +g+ +  ekt+Wvmh+y++
  Pgl002938 154 NE-NGIQRGWKKILVLYmsTGKGKMFEKTNWVMHQYHF 190
                99.99************7768888899*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-3741209IPR003441NAC domain
PROSITE profilePS5100531.35356209IPR003441NAC domain
PfamPF023651.3E-1457189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MARAPWLIDS RRFATKTKNP TFDPLKEDQN GGPVRKCPNC NYEIDNSDVA QEWPGLPAGV  60
KFDPSDQELM GHLAAKVGVG NSKSHPLIDE FIPTLKEDDG ICYSHPENLP GVKQDGSVCH  120
FFHRTAKAYH TGNRKRRKIQ EDRWHKTGKT RPANENGIQR GWKKILVLYM STGKGKMFEK  180
TNWVMHQYHF GSEEDENDGE FVVSKIFYQQ QHKQLDKNEV PQETEVTSVI PIPDPLTPVT  240
STPEPSCYAK SQADLDAAKE EQLNCIDSPG QVAGFRVATF EGNASTNNLT YQAVNDQANY  300
DSLQGVSDHT NVNLDNSTWQ GLTCRANISL DDSSLLPKES QLKVDSQQLL DDFLFCAETV  360
QNPSPQNLIL DPVEYGRIKA KELDKAVNAS DAIPCLDNIE LDTPPDIENI ELNFNSQESL  420
SAWTRDKTH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.133400.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011627944.11e-121SUPPRESSOR OF GAMMA RESPONSE 1 isoform X4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-100NAC family protein