PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl002442
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 475aa    MW: 53009.8 Da    PI: 6.1408
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55344438PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-42094PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.48.5e-34571991128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgyWk 84 
                lp+G++F+Ptd+el+ e+L++kve +       ++++   ++   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+          + +W+
  Pgl002442  57 LPAGVKFDPTDQELL-EHLEAKVEINGhkphplIDEFIPtLEGEdGICYTHPEKLP-GVTRDGLNRHFFHRPSKAYTTGTRKRRKiqsecdlqGGETRWH 154
                799************.99****998875565442222222444436**********.555667799******************84555554433778** PP

        NAM  85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                +tgk+++v + +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Pgl002442 155 KTGKTRPVSV-NGKQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 199
                *********9.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-3751218IPR003441NAC domain
PROSITE profilePS5100532.23657218IPR003441NAC domain
PfamPF023651.5E-1558199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MADPMANFSG KERSNATNSC SLIDAKLEEQ QISGSKVCPS CGHKFEFKEG IQDWPGLPAG  60
VKFDPTDQEL LEHLEAKVEI NGHKPHPLID EFIPTLEGED GICYTHPEKL PGVTRDGLNR  120
HFFHRPSKAY TTGTRKRRKI QSECDLQGGE TRWHKTGKTR PVSVNGKQKG CKKILVLYTN  180
FGKHRKPEKT NWVMHQYHLG LQEEEKEGEL VVSKVFYQTQ PRQCNWERAT SDIAGSVITR  240
NQSHEMTPTQ PGDGSFKTYP AAAMVEKSMT DINPGPSCAY NVDGLQQANA DQFPFASCPR  300
SFDEGISDST GKGSESSHCT PHSCDEHEEH EHDPQNALND ALKRGFPMPA GRREIIAWRF  360
DKRSDSVNVD LKSSGHYRAQ SSNADMTCRA GESQEPDQDG DLAAVGEILS RPQLQEKLQN  420
VAGKSSSQKL SFEDIFMEST GIKEGAALTN SQDTDWIKYS SFWTESDSPE NSRMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-125719915140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.59980.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027069993.11e-141NAC domain-containing protein 75-like
RefseqXP_027069994.11e-141NAC domain-containing protein 75-like
RefseqXP_027069995.11e-141NAC domain-containing protein 75-like
RefseqXP_027069996.11e-141NAC domain-containing protein 75-like
RefseqXP_027176602.11e-141NAC domain-containing protein 75
TrEMBLA0A2U1MT061e-141A0A2U1MT06_ARTAN; NAC domain-containing protein
STRINGXP_009595150.11e-137(Nicotiana tomentosiformis)