PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl002156
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 509aa    MW: 56506.8 Da    PI: 5.7458
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55334612PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-8549262PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.4e-35151062102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++ ++sws  +nsf+v++++ef++ +Lp+yFkhsnf+SFvRQLn+YgF+k++ e+         weF+++ F kg+++ll++i+
     Pgl002156  15 FLTKTYDMVDDPATNAMVSWSPGSNSFIVWNPTEFSRVLLPTYFKHSNFSSFVRQLNTYGFHKIDPER---------WEFANEGFLKGHRHLLKNIH 102
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     Pgl002156 103 RRKP 106
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.71E-3510104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5911104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.2E-3811104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-181538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.1E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-185365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-186678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MEGSQNGSSN GPPPFLTKTY DMVDDPATNA MVSWSPGSNS FIVWNPTEFS RVLLPTYFKH  60
SNFSSFVRQL NTYGFHKIDP ERWEFANEGF LKGHRHLLKN IHRRKPVHSH SQQQQKGESL  120
SGGACVEIKQ LEDETEKLRQ EKQGLVMELV RLKQHQQGTE FDLQSLEERL QLMEQRQQRM  180
MAFLAKAVQN PNFVAQLVQH HDKIAHIATT NKKRRLPKHD EVLEIGENGC TSSQIVRYDP  240
GKGDAFNRDS PDKLETSMDA FKNFFDDVPV DARDKAKDCG SPQSHSSEPT LTEMHGKSCF  300
PDMPVSLGVS DIYTSSALSD LNSSSRLPEM SISLRSQDVQ ASTGLVGSLR SDVLCNLSLS  360
PHSSSLELSK IDDAGKSVQS GSSENRSFIG SKIGSNDAID MEVGFPYGAA KTTLQEGSIN  420
SKSRGTGLGG TGKGMGTETT KKRINDVFWE QFLTESPQPI DTEGTDSESQ ESSKDQDDVV  480
PEYSNFCNRR ENLDQLTLQM GQLASSVNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-241310427129Heat shock factor protein 1
5d5v_B7e-241310427129Heat shock factor protein 1
5d5v_D7e-241310427129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.9710.0root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9S8X00.0A0A0C9S8X0_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_2945_1895 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.24e-78heat shock factor 3