PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl001862
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ARR-B
Protein Properties Length: 557aa    MW: 61805.9 Da    PI: 6.1647
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55341075PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-28987PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.74.8e-27198250255
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                +r++Wt +LH++Fv av+qL G++kA+Pk+i+e+mkv+gL++e+v+SHLQkYRl
  Pgl001862 198 ARVHWTVQLHQQFVVAVNQL-GIDKAVPKKIVEIMKVQGLSRENVASHLQKYRL 250
                79******************.********************************8 PP
2Response_reg62.42.3e-21311391109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vlivdD+pl + +l+++l++ +y ++++++   +a+ ++ke++  +Dl+++ + +p+ +G++ll+ i   + +lp+i+++++g+ + + + +  Ga 
     Pgl001862  31 VLIVDDDPLCLLVLERMLRQCNY-NATTCSRVLQAISMVKENRdrFDLVMCEVYLPDEEGFRLLE-IVGLGLDLPVIMMSTNGDTSVVMKGITHGAC 125
                   8**********************.***************999999******************97.6667789************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d++ Kp+ +eel++
     Pgl001862 126 DYFIKPIRIEELRN 139
                   ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.4E-1238545IPR017053Response regulator B-type, plant
SuperFamilySSF521721.01E-3027149IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.3E-3428169No hitNo description
SMARTSM004482.1E-2429141IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.78230145IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.2E-1931140IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.75E-2232144No hitNo description
PROSITE profilePS512949.731194253IPR017930Myb domain
SuperFamilySSF466891.52E-18195254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-27196255IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-23198250IPR006447Myb domain, plants
PfamPF002491.3E-5199249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MMDDESCAGK LAEECRSMLQ IENFSPTGLK VLIVDDDPLC LLVLERMLRQ CNYNATTCSR  60
VLQAISMVKE NRDRFDLVMC EVYLPDEEGF RLLEIVGLGL DLPVIMMSTN GDTSVVMKGI  120
THGACDYFIK PIRIEELRNI WQHVVRRRGR ESLKDDLGEC EDREASDSPE TTSKKRKDTS  180
SGDFSDEVID DISSLKRARV HWTVQLHQQF VVAVNQLGID KAVPKKIVEI MKVQGLSREN  240
VASHLQKYRL YLKRLSGAIS EPYPVASFQA ADDSVSGGMM KLQQGEKGVT SSSGAKGLNL  300
GTGVSSSLGV RGLDQSTLKS LQQYRSYQQK LVANRAQILG GIGICPPNFS NTAKVPESMG  360
GSKSGLQRMS SVDMGLLWKA QREQAADENE KHGTANLQNL SQKKLNSSEQ RRFRGSHPRH  420
SRTRTLTDMP IVFQSAKPEV TFQNTPPAKS MLQDVDELLP MDDISWLDST FRPESPIDST  480
FRPESPRAAV ILFDNFVQDV GGSSHSAATT EESNRHAFAS TDFEGRKKAG VGNEDFFSSG  540
STDISDYLVD DLIPHPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-19197253157Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.204810.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotB8AEH12e-89ORR23_ORYSI; Two-component response regulator ORR23
TrEMBLD5A9D60.0D5A9D6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.12e-86response regulator 1