PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl001431
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-X1
Protein Properties Length: 738aa    MW: 81039.2 Da    PI: 7.7721
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55346898PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-30647PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.68.2e-062845118
   zf-NF-X1  1 CGkHkCqklCHeGpCppC 18
               C +HkC+k+CH+G+C++C
  Pgl001431 28 CQNHKCSKICHPGECGEC 45
               448*************** PP
2zf-NF-X1171.3e-0586103118
   zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                CGkH C+ +CH G+CppC
  Pgl001431  86 CGKHLCINTCHQGECPPC 103
                ****************** PP
3zf-NF-X118.83.6e-06187205119
   zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                CGkH Cq+lCH G CppC 
  Pgl001431 187 CGKHFCQELCHSGHCPPCL 205
                ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060087.35E-82261No hitNo description
PfamPF014220.00882845IPR000967Zinc finger, NF-X1-type
SMARTSM004380.00132847IPR000967Zinc finger, NF-X1-type
CDDcd060083.11E-1476122No hitNo description
PfamPF014228.3E-586103IPR000967Zinc finger, NF-X1-type
SMARTSM004380.007686105IPR000967Zinc finger, NF-X1-type
PfamPF0142212147158IPR000967Zinc finger, NF-X1-type
SMARTSM00438270147183IPR000967Zinc finger, NF-X1-type
CDDcd060082.75E-10177229No hitNo description
PfamPF014222.9E-5187204IPR000967Zinc finger, NF-X1-type
SMARTSM004384.8E-5187206IPR000967Zinc finger, NF-X1-type
SMARTSM004380.45244262IPR000967Zinc finger, NF-X1-type
PfamPF0142227252261IPR000967Zinc finger, NF-X1-type
PfamPF014220.024297312IPR000967Zinc finger, NF-X1-type
SMARTSM004380.12297329IPR000967Zinc finger, NF-X1-type
SMARTSM004380.049338359IPR000967Zinc finger, NF-X1-type
PfamPF014244.8E-6448512IPR001374R3H domain
PROSITE profilePS510619.212451516IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
GDMEIQGEID WKNGVLHVKN LCMKMLSCQN HKCSKICHPG ECGECELSPG KVKSCPCGKT  60
QLQNQRKSCM DSVPTCSEVC EKLLPCGKHL CINTCHQGEC PPCLVSVNKK CRCGSSSQTV  120
PCWKTMVSVE ENDEFTCEKS CGQKKNCGRH RCSERCCPLA NRGGSITLSG DWDPHLCQMS  180
CGKKLQCGKH FCQELCHSGH CPPCLETIFS DLSCACGKTS IPPPVPCGTP IPPCLFPCSI  240
PQPCGHLASH DCHFGECPPC TVPVAKECVG SHVVLKNVPC GSRDIRCNKL CGNTRQCGMH  300
ACTRTCHLPP CDSVSMENSS SVARISCGQL CGSPRRDCRH TCTASCHPSI PCPDTRCELL  360
VTITCSCGRL TAKVPVMLEA SDLIQPVQSN SNRVPLGQRK LACDDECTKL EKKKILADAF  420
GICTTIDLPG VSEQISELLA ELIRREPQWV SAVEERFRYL VLGKTKASSN SIRVHVFGPM  480
PKDKRDMLRH LAERWSLFIY SAGWEPKRFL IIQATQKSRA PVRSIMPKGS LPTIGLVQPP  540
PFNSVVDMDP RLVLALFDLP REAEVSSLIL RFGGECELVW LNDKNALAIF TDPARAATAL  600
RRVDHASVYR GAIVVPHNGG LPNRNAWATK DGTAEKANAW KKNEQQTVWM EDSWGEDWSS  660
AEVSKPVWQF KKNPIATTRN PYGALEKDNA GEACSSTSDV QPSSKPLTTM GSIEVSSSQE  720
NQNKYSPSEV DDWEKVFD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.13150.0needle| vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006828449.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLW1NKX50.0W1NKX5_AMBTC; Uncharacterized protein
STRINGERM958650.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1