PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl001389
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TALE
Protein Properties Length: 834aa    MW: 91653.3 Da    PI: 6.8457
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55334525PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-33724PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.73.4e-075135452254
                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                ++y + +++  LA+++gLt +qV++WF N R +
  Pgl001389 513 HPYSKDADKHLLARQTGLTRSQVSNWFINARVR 545
                78888899999********************88 PP

2BELL122.71.5e-39371442172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                +rqelq+kkakL+ +l+eVd+rY+qy++q+++v+ssFea+ag g+ak YtslAlk+iSrhFr+L+daia+qi
  Pgl001389 371 DRQELQMKKAKLVAMLDEVDRRYRQYYHQMHIVVSSFEAAAGFGAAKTYTSLALKTISRHFRSLRDAIAGQI 442
                699********************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-57285440IPR006563POX domain
PfamPF075269.2E-48291439IPR006563POX domain
PROSITE profilePS5007111.046486549IPR001356Homeobox domain
CDDcd000861.19E-10489550No hitNo description
SMARTSM003897.2E-6489553IPR001356Homeobox domain
SuperFamilySSF466894.28E-15490556IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-27492556IPR009057Homeodomain-like
PfamPF059208.4E-15506545IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MATYFPGSNI QPDTMQTLYL MNPDYTGYAD MQTPGNMVLI NQSTGTPSAN SHLAGSGQPQ  60
QHFIGIPFPS APHPQRYSMA SVESSGGTQQ DVTSTLLSSR LGNHGYNVWR NVGNELTFMQ  120
PTDPTPHNNQ SLSGQLNNFS NLGHQSVSEI SPTGMKRATM SSIPEQQLGM NPNGLGLQLD  180
QSHGLAAHGR GLSLSLSPQQ LSNIQLSCFQ NQPTDSEVNC PTISEATSQE NMNRADRLTN  240
KLSGSLSSFR ASSRDGMLGT KFLGTVNGSE CNKQMHHGTN AIGAAELSSS LTGSKYFKAA  300
QQLLDEVVNV GKGIKSDSVN HQKSQTWFGT ISDKKNIGTE ANDRTTSAIT GPSISAQEMK  360
NEHAFGLTPA DRQELQMKKA KLVAMLDEVD RRYRQYYHQM HIVVSSFEAA AGFGAAKTYT  420
SLALKTISRH FRSLRDAIAG QIRLTSKNLG EEDLTGSGKG ETSRLHFVDQ QLRQQRALQQ  480
LGMIQQHAWR PQRGLPERAV SILRAWLFEH FLHPYSKDAD KHLLARQTGL TRSQVSNWFI  540
NARVRLWKPM VEEMYMEELR EADTQNRAAD SKVTTESGQN NEETVSKEGP GNSENGQEEK  600
SKKNRTLNNS IEEGGYMQQN GGFKPDQASD RINGRNQTTG MTGVSDSHVF HEIDNEDPRQ  660
GQQKKVRNGI QDSTILLPPN MGMDVDLKSE ETGSEYILDT SKFASDEKHA SEGYSFANNK  720
MVRLDDSGSF GSYQLGGLSR YGQETFTPKY SGIGGVSLTL GLQHCDDLSL SGTQQSYNSS  780
QGLGSGRRHD LGSDSDDYCH IHDTSAVRGA STYDNMSMQN GKRFATHMLH DFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-15495552158Homeobox protein Meis1
4xrs_B2e-15495552158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.116050.0needle| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RM180.0A0A0C9RM18_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_11489_4138 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.39e-98BEL1-like homeodomain 1