PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl001389 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | TALE | ||||||||||||
Protein Properties | Length: 834aa MW: 91653.3 Da PI: 6.8457 | ||||||||||||
Description | TALE family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.7 | 3.4e-07 | 513 | 545 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++y + +++ LA+++gLt +qV++WF N R + Pgl001389 513 HPYSKDADKHLLARQTGLTRSQVSNWFINARVR 545 78888899999********************88 PP | |||||||
2 | BELL | 122.7 | 1.5e-39 | 371 | 442 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqelq+kkakL+ +l+eVd+rY+qy++q+++v+ssFea+ag g+ak YtslAlk+iSrhFr+L+daia+qi Pgl001389 371 DRQELQMKKAKLVAMLDEVDRRYRQYYHQMHIVVSSFEAAAGFGAAKTYTSLALKTISRHFRSLRDAIAGQI 442 699********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.5E-57 | 285 | 440 | IPR006563 | POX domain |
Pfam | PF07526 | 9.2E-48 | 291 | 439 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.046 | 486 | 549 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.19E-10 | 489 | 550 | No hit | No description |
SMART | SM00389 | 7.2E-6 | 489 | 553 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-15 | 490 | 556 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-27 | 492 | 556 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.4E-15 | 506 | 545 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 834 aa Download sequence Send to blast |
MATYFPGSNI QPDTMQTLYL MNPDYTGYAD MQTPGNMVLI NQSTGTPSAN SHLAGSGQPQ 60 QHFIGIPFPS APHPQRYSMA SVESSGGTQQ DVTSTLLSSR LGNHGYNVWR NVGNELTFMQ 120 PTDPTPHNNQ SLSGQLNNFS NLGHQSVSEI SPTGMKRATM SSIPEQQLGM NPNGLGLQLD 180 QSHGLAAHGR GLSLSLSPQQ LSNIQLSCFQ NQPTDSEVNC PTISEATSQE NMNRADRLTN 240 KLSGSLSSFR ASSRDGMLGT KFLGTVNGSE CNKQMHHGTN AIGAAELSSS LTGSKYFKAA 300 QQLLDEVVNV GKGIKSDSVN HQKSQTWFGT ISDKKNIGTE ANDRTTSAIT GPSISAQEMK 360 NEHAFGLTPA DRQELQMKKA KLVAMLDEVD RRYRQYYHQM HIVVSSFEAA AGFGAAKTYT 420 SLALKTISRH FRSLRDAIAG QIRLTSKNLG EEDLTGSGKG ETSRLHFVDQ QLRQQRALQQ 480 LGMIQQHAWR PQRGLPERAV SILRAWLFEH FLHPYSKDAD KHLLARQTGL TRSQVSNWFI 540 NARVRLWKPM VEEMYMEELR EADTQNRAAD SKVTTESGQN NEETVSKEGP GNSENGQEEK 600 SKKNRTLNNS IEEGGYMQQN GGFKPDQASD RINGRNQTTG MTGVSDSHVF HEIDNEDPRQ 660 GQQKKVRNGI QDSTILLPPN MGMDVDLKSE ETGSEYILDT SKFASDEKHA SEGYSFANNK 720 MVRLDDSGSF GSYQLGGLSR YGQETFTPKY SGIGGVSLTL GLQHCDDLSL SGTQQSYNSS 780 QGLGSGRRHD LGSDSDDYCH IHDTSAVRGA STYDNMSMQN GKRFATHMLH DFVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-15 | 495 | 552 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-15 | 495 | 552 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.11605 | 0.0 | needle| root| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0C9RM18 | 0.0 | A0A0C9RM18_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_11489_4138 transcribed RNA sequence |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 9e-98 | BEL1-like homeodomain 1 |