PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Pgl001215 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||||||||||
Protein Properties | Length: 177aa MW: 20204 Da PI: 7.0731 | ||||||||||||||||
Description | NAC family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.4 | 2.9e-49 | 16 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lp GfrF+Ptdeel+ +yLkkkv+++++++ ++i+e+d y+++PwdLp+k+ +ekewyfFs+rd+ky ++ r+nr++ sgyWkatg+dk+++ +++++v Pgl001215 16 LPTGFRFDPTDEELLIHYLKKKVSSSPFPA-SIIAEIDPYSHDPWDLPAKAFFGEKEWYFFSPRDRKYLNEARPNRSAGSGYWKATGTDKSIVITSSQKV 114 799***************************.89***************8777899********************************************* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk+Lvfy+g +g kt+W+mhey l Pgl001215 115 GVKKSLVFYTGMPLEGLKTNWIMHEYGL 142 **************************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-54 | 11 | 146 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.114 | 16 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-27 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MTIDGLPFHQ QLLPQLPTGF RFDPTDEELL IHYLKKKVSS SPFPASIIAE IDPYSHDPWD 60 LPAKAFFGEK EWYFFSPRDR KYLNEARPNR SAGSGYWKAT GTDKSIVITS SQKVGVKKSL 120 VFYTGMPLEG LKTNWIMHEY GLAETLPSER KGSMLDIRES ESFFHGCFVL GFRDTVT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-59 | 16 | 153 | 17 | 151 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-59 | 16 | 153 | 17 | 151 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-59 | 16 | 153 | 17 | 151 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-59 | 16 | 153 | 17 | 151 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-59 | 16 | 153 | 20 | 154 | NAC domain-containing protein 19 |
3swm_B | 5e-59 | 16 | 153 | 20 | 154 | NAC domain-containing protein 19 |
3swm_C | 5e-59 | 16 | 153 | 20 | 154 | NAC domain-containing protein 19 |
3swm_D | 5e-59 | 16 | 153 | 20 | 154 | NAC domain-containing protein 19 |
3swp_A | 5e-59 | 16 | 153 | 20 | 154 | NAC domain-containing protein 19 |
3swp_B | 5e-59 | 16 | 153 | 20 | 154 | NAC domain-containing protein 19 |
3swp_C | 5e-59 | 16 | 153 | 20 | 154 | NAC domain-containing protein 19 |
3swp_D | 5e-59 | 16 | 153 | 20 | 154 | NAC domain-containing protein 19 |
4dul_A | 4e-59 | 16 | 153 | 17 | 151 | NAC domain-containing protein 19 |
4dul_B | 4e-59 | 16 | 153 | 17 | 151 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098344.1 | 6e-67 | NAC transcription factor 56 | ||||
Swissprot | Q84TD6 | 1e-64 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | D5ABS0 | 3e-92 | D5ABS0_PICSI; Uncharacterized protein | ||||
STRING | XP_007149615.1 | 4e-65 | (Phaseolus vulgaris) | ||||
STRING | A0A087H6U0 | 3e-65 | (Arabis alpina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 7e-66 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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