PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Pgl001015 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LSD | ||||||||||||||||
Protein Properties | Length: 243aa MW: 25384.3 Da PI: 8.4338 | ||||||||||||||||
Description | LSD family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.7 | 7.8e-13 | 74 | 98 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrtlL YP GAp+V+Ca+C++V Pgl001015 74 CNGCRTLLVYPQGAPNVCCAVCNAV 98 ************************9 PP | |||||||
2 | zf-LSD1 | 41.3 | 2.6e-13 | 113 | 137 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+CrtlL+Y rGA+sV+C++C tV Pgl001015 113 CGHCRTLLMYVRGATSVQCSCCTTV 137 ************************9 PP | |||||||
3 | zf-LSD1 | 37.6 | 3.7e-12 | 151 | 175 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C t+L YP+GApsV+Ca+C+ V Pgl001015 151 CGNCFTTLVYPYGAPSVKCAVCHYV 175 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.9E-12 | 71 | 101 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-11 | 74 | 98 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.8E-13 | 110 | 139 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.6E-11 | 113 | 137 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.5E-9 | 148 | 178 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.4E-12 | 151 | 175 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MLSGGYSTRS DTTPVNNGSA NGPIGSAPPR INSIQNNNPG AVRPGWGTMP LRMNPYPPQP 60 MPLPPPNVQG QLVCNGCRTL LVYPQGAPNV CCAVCNAVTA VPPPGTEMAQ LICGHCRTLL 120 MYVRGATSVQ CSCCTTVNLA MEANQVAHVN CGNCFTTLVY PYGAPSVKCA VCHYVTSVGQ 180 ISNMRMPLPA QRPPAAATTA PASSSALPTR SQTQTVVVEN PMTVDERGKM VSNVAVGVTT 240 EKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.2809 | 0.0 | needle| root| stem| vegetative bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002988289.1 | 5e-84 | protein LOL1 | ||||
Swissprot | Q6ASS2 | 2e-66 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A9NTQ6 | 1e-173 | A9NTQ6_PICSI; Uncharacterized protein | ||||
STRING | EFJ10708 | 2e-83 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 1e-45 | lsd one like 1 |
Publications ? help Back to Top | |||
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