PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl000456
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 515aa    MW: 57886.4 Da    PI: 4.6262
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-12926PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.13.7e-4961361129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                lppGfrFhPtdeel+++yLk k+++     + evi++vd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatg+d++++s + 
  Pgl000456   6 LPPGFRFHPTDEELISCYLKGKLNHGLkAAELEVISKVDLYKLEPWDLPeKsFLPSTDMEWYFFSPRDRKYPNGSRTNRATEAGYWKATGRDRKIYS-RA 104
                79********************987763555689**************95344556788**************************************.88 PP

        NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                +++g+kk   f +grap+ge+tdWvmheyrle
  Pgl000456 105 STIGIKKDSSFLRGRAPQGERTDWVMHEYRLE 136
                99****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-573158IPR003441NAC domain
PROSITE profilePS5100557.7666158IPR003441NAC domain
PfamPF023659.3E-257135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MGTFALPPGF RFHPTDEELI SCYLKGKLNH GLKAAELEVI SKVDLYKLEP WDLPEKSFLP  60
STDMEWYFFS PRDRKYPNGS RTNRATEAGY WKATGRDRKI YSRASTIGIK KDSSFLRGRA  120
PQGERTDWVM HEYRLEENES EAGPCLQNAF VLCRVFKKSG LGAKSGEQYT APVEKGDLSL  180
IKKNPSPSYF GDIEVHSEDQ SKPVEGIDAN SHLQSKFPSK ILNDTTGDSA PLNKWLDILL  240
DDTNSNSSCV APDEDTIHTQ VDAMPDTPRT QCESACLPFD ESEFPQIPVN ISFSQYGVPN  300
GCLDAYFEEE RMLDEMLSAA SQDYSNSKAY RSFIGDTFAD ILNGGYIEVK NLLPSMEELE  360
NHDSCLWEVP NPSLHHEGTG IQICSRSPVL QSHKQGILSE GTAARRVCMQ LHEMEDSAER  420
NEKDVNVRHS QNMSNDWYDS KSGSTSCPEM QQLHFDQFDG HKCDSENIRE NEDSAPEALA  480
TYMAGRIDGF ILVTRPYGLC YTLCISGETF LDLGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-48415815165NO APICAL MERISTEM PROTEIN
1ut4_B4e-48415815165NO APICAL MERISTEM PROTEIN
1ut7_A4e-48415815165NO APICAL MERISTEM PROTEIN
1ut7_B4e-48415815165NO APICAL MERISTEM PROTEIN
3swm_A5e-48115815168NAC domain-containing protein 19
3swm_B5e-48115815168NAC domain-containing protein 19
3swm_C5e-48115815168NAC domain-containing protein 19
3swm_D5e-48115815168NAC domain-containing protein 19
3swp_A5e-48115815168NAC domain-containing protein 19
3swp_B5e-48115815168NAC domain-containing protein 19
3swp_C5e-48115815168NAC domain-containing protein 19
3swp_D5e-48115815168NAC domain-containing protein 19
4dul_A4e-48415815165NAC domain-containing protein 19
4dul_B4e-48415815165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.228050.0root| somatic embryo| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LLW80.0B8LLW8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-73NAC domain containing protein 28