PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl000353
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 654aa    MW: 72543.4 Da    PI: 7.7976
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55334278PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-44035PU_refplantGDBView CDS
PUT-175a-Picea_glauca-44036PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.56.3e-1081106227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                + + C +++rtG C +G +C+F+H+p
  Pgl000353  81 GVADCTYYSRTGSCGFGMNCRFNHPP 106
                7899********************96 PP
2zf-CCCH24.54.7e-08125145526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+f+++ GtCk+G +CkF+H+
  Pgl000353 125 ECQFYLK-GTCKFGTSCKFNHC 145
                7******.*************7 PP
3zf-CCCH38.91.4e-12167192227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+f++r G CkyG  CkF+H++
  Pgl000353 167 GEKECPFYMRIGSCKYGVACKFNHPE 192
                6789********************96 PP
4zf-CCCH352.5e-11303329127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C++++rtG+Ck+G+ C+++H++
  Pgl000353 303 PGQPECQHYLRTGECKFGAACRYHHPK 329
                5789*********************96 PP
5zf-CCCH34.24.1e-11419445127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++ C++f++tG+C++G +C+++H++
  Pgl000353 419 PGQPDCPYFLKTGECRFGVTCQYHHPK 445
                5789*********************96 PP
6zf-CCCH32.11.9e-10536562127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++ C ++++tG C++G+ C+++H++
  Pgl000353 536 PGQPDCAHYLKTGDCSFGAACRYNHPK 562
                5789*********************96 PP
7zf-CCCH29.21.6e-09583607226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                + + C+f++r G+Ck+G+rCkF H+
  Pgl000353 583 GKPTCMFYSRCGICKFGPRCKFDHS 607
                7899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-579106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.46979107IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-781106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-583108IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-485105IPR000571Zinc finger, CCCH-type
SMARTSM003560.041120146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136120147IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-5125145IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5165192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.084165193IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5167193IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-10167192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4171191IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5302329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.779302330IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-9304329IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6418445IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.45418446IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8420445IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-5423447IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-4424445IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4535562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868535563IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-8537562IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-4581608IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.418581609IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-7583607IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5585608IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
XFIWGRKHSD DSWTLKCKYR DDTMSSEVSN KPNFAPNWPF QPAVTPVTTQ NFDEAMQMPT  60
QARDSSNLLE AFSGPYPERP GVADCTYYSR TGSCGFGMNC RFNHPPNRKQ VPQSGELPEK  120
AGQFECQFYL KGTCKFGTSC KFNHCNDKAE SAGQAQFNFL GLPIRQGEKE CPFYMRIGSC  180
KYGVACKFNH PEPTVEGMAP PVSNFPIDAI TRSLESSFEM PYSPVHLPRP SPRTPHVPSA  240
HLQEHTVNMH AMNPPPPHGM PPMRGWNTDS QGPANTLSSS EAKLPIGMSF MNTQTEEAFP  300
ERPGQPECQH YLRTGECKFG AACRYHHPKR TEHSSTCMPG QMGIPLQSGP VRSFPSSEEK  360
KYYPGVDFLN NSTQCSDRSE SIKQTVFPRT APFSSETMPL PVMQTQESVT QKQTFSERPG  420
QPDCPYFLKT GECRFGVTCQ YHHPKERFEK SSESMFNPSG PPLHYVPGAP ISSLEEKQRP  480
VGTSLLNDTK QTTDLAVSSV HSVLMSSEPI FSAAKAIPTP QPWEIATKRE NFPERPGQPD  540
CAHYLKTGDC SFGAACRYNH PKESNEQLSA CMLSEMGLPL RPGKPTCMFY SRCGICKFGP  600
RCKFDHSVTG PNSCGSVPLN SELPVDPYSS GTSAIHTRAS SASSITSQKC QRLT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.134280.0stem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.14e-58zinc finger nuclease 3