PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG034226.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 343aa    MW: 37838 Da    PI: 8.5753
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG034226.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH482.1e-15268293126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +ktelC+ +++tGtC+yG+ C+FaHg
  CCG034226.1 268 WKTELCNKWQETGTCPYGNHCQFAHG 293
                  8************************8 PP
2zf-CCCH22.91.5e-07306331126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt  Cr  +++G C+yG rC+F H+
  CCG034226.1 306 YKTQACRMVLAGGVCPYGHRCHFRHS 331
                  9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.14E-11264299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-18264300IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-9267294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234267295IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-12268293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-9301335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-12301334IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-5305332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272305333IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-5306331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEKTESPPSD SKTAAQSPPS HSKTAAQSPP FDCHQASDHD QFASSFTSLY HSIFPPKPSQ  60
LPNSLSFTPS TNASPSSSSA ADEISTENRL RQAQLILEYQ DLCEHYNLSL ARLQTLTNEL  120
ELIRRENADL RAANSELVKL ISLSSESVMQ HQNRTFGNNR DGAFERRNNA NNVERERVTL  180
PKSISVRSSG FVKVNQAVSG NVSNNGGGRG SASGNSTRSR VASHLDQLVS GSSVQMQQRV  240
YVPGGGKKRS EEEIAAGMEL EVFNQGMWKT ELCNKWQETG TCPYGNHCQF AHGIGELRPV  300
IRHPRYKTQA CRMVLAGGVC PYGHRCHFRH SLTDQDRLLL GPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-22268331467Butyrate response factor 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090410.0AC209041.1 Populus trichocarpa clone POP051-F04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035121.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like isoform X1
TrEMBLA0A2I4KKY90.0A0A2I4KKY9_POPTR; C3H family protein
STRINGPOPTR_0005s15100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.19e-72C3H family protein