PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG034189.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 187aa    MW: 21866.7 Da    PI: 9.9783
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG034189.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.85.8e-1171179294
                  EEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTH.HHHHHHHT--TT-EEEEE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliy..rkksgryvltkGW.keFvkangLkegDfvvFk 83 
                  +k+++psd ++++rl +p + +e+h             +++++ + ++++ d + rs+   + +  + +s++y++ +GW k+Fv+  +L egD + ++
  CCG034189.1  71 KKKMKPSDLGNLCRLLVPSDLVEKHilpflntdqikqvNQETNLGLKVSVWDMNTRSMHQLV-FkrWSTSRSYIFNDGWtKDFVRRRNLVEGDEIGLY 167
                  699*************************8888766665444456666666666665554444.145*************557***************9 PP

                  E-SS.SEE..EE CS
           B3  84 ldgr.sefelvv 94 
                   d+  s+f+++v
  CCG034189.1 168 WDNYhSRFNFNV 179
                  887667775444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-1767177IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-1768181No hitNo description
Gene3DG3DSA:2.40.330.102.2E-1769180IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.6E-470183IPR003340B3 DNA binding domain
PfamPF023621.1E-772179IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEKHGGFGGG EVRWNQPRNK ESAEELERSR VAFNLRRMRT SYTLGDLLEE SSRGVSTHLS  60
LYHHYDPFTI KKKMKPSDLG NLCRLLVPSD LVEKHILPFL NTDQIKQVNQ ETNLGLKVSV  120
WDMNTRSMHQ LVFKRWSTSR SYIFNDGWTK DFVRRRNLVE GDEIGLYWDN YHSRFNFNVL  180
SRAAAAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035168.11e-138PREDICTED: B3 domain-containing protein At2g33720-like
TrEMBLB9H2Z81e-132B9H2Z8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s09870.11e-133(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF5791221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.15e-32B3 family protein