PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG034185.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 297aa    MW: 31810.1 Da    PI: 7.6606
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG034185.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.66e-314107199
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ l+q+++e
  CCG034185.1   4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLMWSGSWPLCQAAVE 101
                  6************************************************************************************************* PP

       DUF260  94 lallke 99 
                  ++l+++
  CCG034185.1 102 AVLRGA 107
                  998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381557.2E-931296IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.9643109IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLMWS GSWPLCQAAV EAVLRGASIT QINSETAANA  120
QGPPLKAYDI RHVSKDENSA ASNDANRVRT RCRVGRVVKP KASKPACGGN GLGSIVVDMS  180
ATRNGLTRSA SHESSVSHQS ELAMVDGESK ETDESMMSVE TAEDSLLFRS EPESKSDLAT  240
PDAASNEIAG LGLDLALGLE PVSRAHHVVP VKKRRIEAPG SSDFDTCKME LGLDYAA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035061.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-107LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2K2ASG40.0A0A2K2ASG4_POPTR; Uncharacterized protein
STRINGcassava4.1_012667m1e-167(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-94LOB domain-containing protein 41