PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG034159.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HSF | ||||||||
Protein Properties | Length: 359aa MW: 41212.5 Da PI: 5.2345 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.8 | 9.6e-35 | 46 | 137 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++++++d+ +++++sws+ g sfvv+d+++f++++Lp+yFkh+ f+SFvRQLn+YgF+k++ ++ weF+++ F +g+k+ll++ik CCG034159.1 46 FLTKTFDMVDDPMTNHIVSWSRGGFSFVVWDPHSFSSNLLPRYFKHNTFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRGQKQLLRNIK 133 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k CCG034159.1 134 RRKA 137 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.5E-38 | 42 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.8E-34 | 42 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.1E-59 | 42 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.6E-19 | 46 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.2E-31 | 46 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.6E-19 | 84 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.6E-19 | 97 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MNPYLTVKQE YPGSSLLPLS SGDEPPTMML PPQPMEGLHD TGPPPFLTKT FDMVDDPMTN 60 HIVSWSRGGF SFVVWDPHSF SSNLLPRYFK HNTFSSFVRQ LNTYGFRKID PDRWEFANEG 120 FLRGQKQLLR NIKRRKAASQ PLSQQQAPDA CVEVSRFGLD GEIDLLKRDR QVLMMELAKL 180 RQQQQKARSY IQAMEQRLQW TEQKQQQMMQ FLARAMQNPA FLLQLVQLKG KRKELEEAMT 240 KKRRIPVDQR PGRSGGGESN RIDESANPIK AEALEYGDYG FEVSELEALA LEMQGYGRAR 300 REQEDGVEVL EPLESGDREL DEGFWEELLN ESAGGGDDED VNTLAERLGY LRSSPKYRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 9e-25 | 44 | 135 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 9e-25 | 44 | 135 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 9e-25 | 44 | 135 | 27 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP013988 | 0.0 | KP013988.1 Populus simonii heat shock transcription factor A7a2 (HsfA7a2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011012276.1 | 0.0 | PREDICTED: heat stress transcription factor A-7b-like isoform X1 | ||||
Swissprot | Q9LUH8 | 1e-121 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | B9GSI7 | 0.0 | B9GSI7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s04900.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-117 | heat shock transcription factor A6B |