PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG033995.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 434aa MW: 49296.6 Da PI: 7.9971

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG033995.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	401	1.2e-122	36	434	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal................. 81 l++lL++cA+ +s++d ++a++lL+ ls ++sp gd+++Rl+ f++AL+ rl +++ ++ a +p s +n +a + CCG033995.1 36 LRQLLVTCADLISQSDYSAAKRLLSILSSNSSPCGDSIERLVYQFVRALSIRLDSHGIPTSTAPAPHVFSINN----IANTsppcgtdnkmlnsydwd 129 689*************************************************9666666555555555444....222234445556666667888 PP GRAS 82 ......kl..fsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLa 166 ++ +++++P+++fshltaNqaIleav+g +++HiiDf+i++G+QWp+++qaLa+Rp +pp+lRiTg g+ + ++l++tg+rL CCG033995.1 130 qetlrsCYlsLNQITPFIRFSHLTANQAILEAVQGGqQAIHIIDFEIMHGVQWPPFMQALADRPnntlYPPPRLRITGTGH----DLNMLHRTGDRLL 223 8777662256*******************987699*********************777777*******....9******** PP GRAS 167 kfAeelgvpfefnvl.....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259 kfA++lg++f+f++l ++l+ ++++ + p+EalaVn+v lhr+l+++ +L+ +k l+Pkvv+v+e+ea+hn++ Fl+rfle CCG033995.1 224 KFAQSLGLRFQFHPLlllnnDPTSLALYLPSAITLLPDEALAVNCVSYLHRFLKDDSREL---LLFLHKIKALNPKVVTVAEREANHNQPLFLQRFLE 318 **********9775322235666689999****************6555444...59***************************** PP GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356 al++y alfdslea+lp++++er vE+ ++grei+++va+eg+ rrerh+++e+W+++++++GF++vpls +a +qaklllr ++ s+gy+++ ++ CCG033995.1 319 ALDHYKALFDSLEATLPPKNRERLAVEQIWFGREIMDIVAAEGEGRRERHKKFETWEMMMKSVGFNKVPLSPFALSQAKLLLRLHYpSEGYQLQILKN 416 ********************************************************************************************** PP GRAS 357 slvlgWkdrpLvsvSaWr 374 +++lgW++++L+s+S+W+ CCG033995.1 417 AFFLGWRNHSLFSISSWQ 434 ***************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.819	10	413	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.0E-120	36	434	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MLGSQLQSQS QLMSSSTSHV QGQEEEIPRP QTAFQLRQLL VTCADLISQS DYSAAKRLLS 60 ILSSNSSPCG DSIERLVYQF VRALSIRLDS HGIPTSTAPA PHVFSINNIA NTSPPCGTDN 120 KMLNSYDWDQ ETLRSCYLSL NQITPFIRFS HLTANQAILE AVQGGQQAIH IIDFEIMHGV 180 QWPPFMQALA DRPNNTLYPP PRLRITGTGH DLNMLHRTGD RLLKFAQSLG LRFQFHPLLL 240 LNNDPTSLAL YLPSAITLLP DEALAVNCVS YLHRFLKDDS RELLLFLHKI KALNPKVVTV 300 AEREANHNQP LFLQRFLEAL DHYKALFDSL EATLPPKNRE RLAVEQIWFG REIMDIVAAE 360 GEGRRERHKK FETWEMMMKS VGFNKVPLSP FALSQAKLLL RLHYPSEGYQ LQILKNAFFL 420 GWRNHSLFSI SSWQ

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MLGSQLQSQS QLMSSSTSHV QGQEEEIPRP QTAFQLRQLL VTCADLISQS DYSAAKRLLS  60
ILSSNSSPCG DSIERLVYQF VRALSIRLDS HGIPTSTAPA PHVFSINNIA NTSPPCGTDN  120
KMLNSYDWDQ ETLRSCYLSL NQITPFIRFS HLTANQAILE AVQGGQQAIH IIDFEIMHGV  180
QWPPFMQALA DRPNNTLYPP PRLRITGTGH DLNMLHRTGD RLLKFAQSLG LRFQFHPLLL  240
LNNDPTSLAL YLPSAITLLP DEALAVNCVS YLHRFLKDDS RELLLFLHKI KALNPKVVTV  300
AEREANHNQP LFLQRFLEAL DHYKALFDSL EATLPPKNRE RLAVEQIWFG REIMDIVAAE  360
GEGRRERHKK FETWEMMMKS VGFNKVPLSP FALSQAKLLL RLHYPSEGYQ LQILKNAFFL  420
GWRNHSLFSI SSWQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	9e-62	38	434	6	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209044	0.0	AC209044.1 Populus trichocarpa clone POP057-J01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011044695.1	0.0	PREDICTED: scarecrow-like protein 18 isoform X1
Swissprot	Q9ZWC5	1e-134	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	B9IDL7	0.0	B9IDL7_POPTR; Uncharacterized protein
STRING	POPTR_0015s01070.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12926	21	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-137	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]