PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG033988.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 255aa MW: 28187.3 Da PI: 8.1987

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG033988.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.2e-39	31	92	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss CCG033988.1 31 KEQALNCPRCTSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 92 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-27	27	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-33	33	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.022	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MDTSTQWPQG IGVVKPVEGP DMLERRARPQ KEQALNCPRC TSTNTKFCYY NNYSLSQPRY 60 FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS SSNPSSSAAA ASEKKFPLDL TQPNFHQSAT 120 DQNPKIHEGP DLNLAYPPSH ISAMELLKSS GMNPRGFSAF MSIPAASDSN NMFSTGFPLQ 180 EFKPSTQNFS LEGFESGYSN IQGVHETSSS ARLLFPIEDF KQQVPSNSEF ERIDARGQGE 240 GAPGYWNGML GGESW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ402844	0.0	FJ402844.1 Populus tomentosa Dof1 (Dof1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011044685.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like
Swissprot	Q8LAP8	9e-53	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	B9IDM4	1e-177	B9IDM4_POPTR; Dof family protein
STRING	POPTR_0015s01160.1	1e-178	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	8e-48	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]