PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033925.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 177aa    MW: 20363.1 Da    PI: 5.0047
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033925.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind82.46.7e-261472260
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                  Fl+k+y++++d+++++++sws++ nsfvv++  ef++++LpkyFkhsnf+SFvRQLn+Y
   CCG033925.1 14 FLSKTYDMVDDPSTDSVVSWSSSDNSFVVWNVPEFQTDLLPKYFKHSNFSSFVRQLNTY 72
                  9********************999**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.8E-28672IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-261089IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.66E-241273IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.5E-161437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.1E-221478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-165264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-166577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDSGNNNANT VPPFLSKTYD MVDDPSTDSV VSWSSSDNSF VVWNVPEFQT DLLPKYFKHS  60
NFSSFVRQLN TYLDNYVNFT AICVSIYPKL NAMRGNVFFS FLVFHSGNIS KSEVGWVGGC  120
LPIRPSRYYL LQSACYFIIN QFSSSCFFFF FFFEMLFILL ELTNFFYGVT GWNMLSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-184721987Heat shock factor protein 1
5d5v_B9e-184721987Heat shock factor protein 1
5d5v_D9e-184721987Heat shock factor protein 1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139901e-113KP013990.1 Populus simonii heat shock transcription factor A1d (HsfA1d) gene, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.17e-15heat shock factor 1