PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033904.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRF
Protein Properties Length: 324aa    MW: 36389.2 Da    PI: 7.9485
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033904.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.2e-2572116145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  CCG033904.1  72 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 116
                  79****************************************986 PP
2QLQ65.21.6e-221046137
          QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                 s+FT +Q+q+L++Q+l+yKy++a++PvPp+L+++iq+
  CCG033904.1 10 SPFTVSQWQELEHQALIYKYMVAGLPVPPDLVLPIQR 46
                 89*********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.2E-131046IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.9E-161145IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.5071146IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.76272116IPR014977WRC domain
PfamPF088793.7E-2173115IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGTGVMTMRS PFTVSQWQEL EHQALIYKYM VAGLPVPPDL VLPIQRSFES ISHRFFHHPT  60
MSYCTFYGKK VDPEPGRCRR TDGKKWRCSK DAYPDSKYCE RHMHRGRNRS RKPVESQTMT  120
QSSSTVTSLT VTGSSSGTGS FQNLPLHTYS NPQGTASGTN QSYYHMNSVP YGIPTKDYRY  180
LQGLKPEGGE HSFLSEASGS NKGLQIESQL DSAWSLMQSR VSSFPTEKST ENSTLQNNHP  240
QHSFFSSDFT TRESVKQDGQ SLRPFFDEWP QNRDAWSGLE NDSSNQTSFS TTQLSISIPM  300
ASSDFSTSCR SPRGELFLGD VGDV
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044430.10.0PREDICTED: growth-regulating factor 4-like
SwissprotQ6AWY69e-92GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A1L6K5650.0A0A1L6K565_POPTO; Growth-regulating factor 5
STRINGcassava4.1_011724m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47812951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-47growth-regulating factor 5