PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG033835.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 450aa MW: 49262 Da PI: 6.593

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG033835.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.8	5.8e-06	341	379	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L CCG033835.1 341 ARKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 379 6778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.925	330	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0026	336	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-11	340	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.40E-6	342	383	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.6E-9	344	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MADEYTSTNW WDSSSSSRNR FDSTGSSSTT SGHTSLGSFA WPTEMVDVKG RSSMETVSVS 60 DSSVVFHDSQ KLQQGHDSPA DLHMMGLGLS SPAIDWNQAL LRGDKSESSF RSMLQDNLSS 120 STNYQQETGI GSSQAQWRSS ERVFAGVSGD SSMNEFKQMN RGFSLDQSQF SPHGSSSDST 180 VTGQGLQSSF PMDSSGIYGS PSTMLQGLLG SDNQVQQSSF DNRSMGYAYG ANYGVSTNEL 240 LPWSKIPQFL RNSPPKQPPH NQLHLSNNAP FWNASSSAMS DVRPSFFPSM QPQFTTSNFD 300 EKPKNISEVR DSNTAVKKSG GEAGAKRPRN ETPSPSPAFK ARKEKMGDRI TALQQLVSPF 360 GKTDTASVLS EAIEYIKFLH EQVTVLSTPY MKNGTPVHHQ QSSEKSRDSE GQKQDLRSRG 420 LCLVPVSSTF PVTHETTVDF WTPTFGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MADEYTSTNW WDSSSSSRNR FDSTGSSSTT SGHTSLGSFA WPTEMVDVKG RSSMETVSVS  60
DSSVVFHDSQ KLQQGHDSPA DLHMMGLGLS SPAIDWNQAL LRGDKSESSF RSMLQDNLSS  120
STNYQQETGI GSSQAQWRSS ERVFAGVSGD SSMNEFKQMN RGFSLDQSQF SPHGSSSDST  180
VTGQGLQSSF PMDSSGIYGS PSTMLQGLLG SDNQVQQSSF DNRSMGYAYG ANYGVSTNEL  240
LPWSKIPQFL RNSPPKQPPH NQLHLSNNAP FWNASSSAMS DVRPSFFPSM QPQFTTSNFD  300
EKPKNISEVR DSNTAVKKSG GEAGAKRPRN ETPSPSPAFK ARKEKMGDRI TALQQLVSPF  360
GKTDTASVLS EAIEYIKFLH EQVTVLSTPY MKNGTPVHHQ QSSEKSRDSE GQKQDLRSRG  420
LCLVPVSSTF PVTHETTVDF WTPTFGGTFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011030917.1	0.0	PREDICTED: transcription factor bHLH123
Swissprot	Q8GXT3	8e-94	BH123_ARATH; Transcription factor bHLH123
TrEMBL	B9I057	0.0	B9I057_POPTR; Uncharacterized protein
STRING	POPTR_0011s13320.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-94	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]