PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG033824.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 577aa MW: 64399.8 Da PI: 6.1734

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG033824.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	422.7	3e-129	207	576	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++cA+a+++++ + ++l+++ + +s +g+p+qRl ay++e+L ar +s++++y+al+++e + ++ l+++++++e++P+lkf++++a CCG033824.1 207 LKQLLIACAKALAENKVNDFDKLIEKARSVVSISGEPIQRLGAYLVEGLVARKESSGTNIYRALRCKEPE---GKDLLSYMHTLYEICPYLKFGYMAA 301 689****************************************************************9...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N aI ea ++e+++Hi+Df i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+ + + l ++++rL+ + e++++p+ef+ v d++ e++ CCG033824.1 302 NGAIAEACKNEDHIHIVDFHIAQGTQWMTLLQALAARPGGAPHVRITGIDDPISKyaRGDGLDAVARRLTAISEKFNIPIEFHG-VPVFAPDVTKEMF 398 ***********************************************9999999**********************.6888999** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +v+pgEalaVn+ l+lh+++desv+++++rd +L+++ksl+Pkvv++veqe+++n+++Fl+rf+e+l+yy a+f+s+++ lpr+++eri+vE+++l+r CCG033824.1 399 DVRPGEALAVNFPLELHHTPDESVDVNNPRDGLLRMIKSLNPKVVTLVEQESNTNTTPFLTRFVETLNYYLAMFESIDVRLPRNQKERISVEQHCLAR 496 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +ivnv+aceg er+erhe ++kW++r+++aGF++ pls+++++ +++llr ++ + y++ e +g+++lgWkdr+L+s+SaW CCG033824.1 497 DIVNVIACEGMEREERHELFGKWKSRFMMAGFRQCPLSSYVNSVIRSLLRCYS-EHYTLVEIDGAMLLGWKDRNLISASAW 576 *********************************************9999.66*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.044	181	558	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-126	207	576	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
MGSHQYFGYG VTGAGLPYSS SYPSVPSMPN RLFGSLKLDI GNSTSSPFPT EFDCDTYATT 60 VSDSQDCYSS TENLSGESSS YFSRLNPSVD CQRESLQLFP GGTSLLQDAS SSHNIKHALL 120 KLETTLMGPD DDEDVNTPNT CLGGSSRPQT SDQKPRAWSQ QREGSHVIQT QKSFVSRQRQ 180 FGEGAHVEKR QKEMEEVPFH GIPSGDLKQL LIACAKALAE NKVNDFDKLI EKARSVVSIS 240 GEPIQRLGAY LVEGLVARKE SSGTNIYRAL RCKEPEGKDL LSYMHTLYEI CPYLKFGYMA 300 ANGAIAEACK NEDHIHIVDF HIAQGTQWMT LLQALAARPG GAPHVRITGI DDPISKYARG 360 DGLDAVARRL TAISEKFNIP IEFHGVPVFA PDVTKEMFDV RPGEALAVNF PLELHHTPDE 420 SVDVNNPRDG LLRMIKSLNP KVVTLVEQES NTNTTPFLTR FVETLNYYLA MFESIDVRLP 480 RNQKERISVE QHCLARDIVN VIACEGMERE ERHELFGKWK SRFMMAGFRQ CPLSSYVNSV 540 IRSLLRCYSE HYTLVEIDGA MLLGWKDRNL ISASAWY

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

MGSHQYFGYG VTGAGLPYSS SYPSVPSMPN RLFGSLKLDI GNSTSSPFPT EFDCDTYATT  60
VSDSQDCYSS TENLSGESSS YFSRLNPSVD CQRESLQLFP GGTSLLQDAS SSHNIKHALL  120
KLETTLMGPD DDEDVNTPNT CLGGSSRPQT SDQKPRAWSQ QREGSHVIQT QKSFVSRQRQ  180
FGEGAHVEKR QKEMEEVPFH GIPSGDLKQL LIACAKALAE NKVNDFDKLI EKARSVVSIS  240
GEPIQRLGAY LVEGLVARKE SSGTNIYRAL RCKEPEGKDL LSYMHTLYEI CPYLKFGYMA  300
ANGAIAEACK NEDHIHIVDF HIAQGTQWMT LLQALAARPG GAPHVRITGI DDPISKYARG  360
DGLDAVARRL TAISEKFNIP IEFHGVPVFA PDVTKEMFDV RPGEALAVNF PLELHHTPDE  420
SVDVNNPRDG LLRMIKSLNP KVVTLVEQES NTNTTPFLTR FVETLNYYLA MFESIDVRLP  480
RNQKERISVE QHCLARDIVN VIACEGMERE ERHELFGKWK SRFMMAGFRQ CPLSSYVNSV  540
IRSLLRCYSE HYTLVEIDGA MLLGWKDRNL ISASAWY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-62	204	576	1	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011030903.1	0.0	PREDICTED: scarecrow-like protein 21 isoform X1
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A1X9QM60	0.0	A0A1X9QM60_9ROSI; Phytochrome A signal transduction 1
STRING	POPTR_0011s13460.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4299	33	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50600.1	1e-176	scarecrow-like 5

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]