PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033678.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92764.1 Da    PI: 6.5054
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033678.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-181674357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  CCG033678.2 16 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilcNIEPKQIKVWFQNRRCREKQ 74
                 6789*****************************************************97 PP
2START169.81.8e-531653722204
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  ++   v+e+l+d++ W + ++  +++ vi +g  g+++l++++
  CCG033678.2 165 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPI-KVAEILKDRPSWFRACRCLDIMSVIPTGsgGTIELIYMQ 261
                  7899******************************************************.8888888888***************************** PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+    ss+vRa +lpSg+li+p+++g+s +++v+hvdl+ ++++++lr+l++s+ + 
  CCG033678.2 262 TYAPTTLAAaRDFWTLRYTTTLEDGSLVICERSLTSSTGGPTgppPSSFVRADMLPSGYLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKIL 359
                  ************************************99999888899*************************************************** PP

                  HHHHHHHHTXXXX CS
        START 192 gaktwvatlqrqc 204
                  ++k+++a+l++ +
  CCG033678.2 360 AQKMTMAALRYIR 372
                  *********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6611175IPR001356Homeobox domain
SMARTSM003898.8E-151379IPR001356Homeobox domain
PfamPF000465.0E-161674IPR001356Homeobox domain
SuperFamilySSF466894.28E-161678IPR009057Homeodomain-like
CDDcd000864.03E-161676No hitNo description
Gene3DG3DSA:1.10.10.601.4E-181874IPR009057Homeodomain-like
CDDcd146861.78E-668107No hitNo description
PROSITE profilePS5084826.539155383IPR002913START domain
CDDcd088751.63E-71159375No hitNo description
Gene3DG3DSA:3.30.530.208.3E-21164369IPR023393START-like domain
SMARTSM002342.3E-49164374IPR002913START domain
SuperFamilySSF559613.16E-37165376No hitNo description
PfamPF018528.2E-51165372IPR002913START domain
PfamPF086701.5E-50698842IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MALSMHSKDK QMDSSKYVRY TPEQVEALER VYTECPKPSS LRRQQLIREC PILCNIEPKQ  60
IKVWFQNRRC REKQRKEASR LQTVNRKLTA MNKLLMEEND RLQKQVSHLV YENGFMRQQI  120
QTASATTTDN SCESVVMSGQ HQQQQNPTPQ QPQRDANNPA GLLTIAEETL AEFLSKATGT  180
AVDWVQMIGM KPGPDSIGIV AVSRNCSGVA ARACGLVSLE PIKVAEILKD RPSWFRACRC  240
LDIMSVIPTG SGGTIELIYM QTYAPTTLAA ARDFWTLRYT TTLEDGSLVI CERSLTSSTG  300
GPTGPPPSSF VRADMLPSGY LIRPCEGGGS IIHIVDHVDL DVWSVPEVLR PLYESSKILA  360
QKMTMAALRY IRQIAQETSG EIQYGGGRQP AVLRTFSQRL CRGFNDAVNG FTDSGWSLLD  420
GDGGDDVTIV INSSPTKFLG SQYNASMSPT FGGVLCAKAS MLLQNVPPAL LVRFLREHRS  480
EWADYGVDVY SAACLKASPY AVPCARPGGF PSSQVILPLA HTVEHEEFLE VVRLEGHAFS  540
PEDVALAQDM YLLQLCSGVD ENALGACAQL IFAPIDESFA DDAPLLPSGF RVIPLDPKTD  600
APAATRTLDL ASTLEVGPGG ARPASEADTN SYNLRSVLTI AFQFTFENHF RDNVAAMARQ  660
YVRGVVASVQ RVAMAISPSR LSSNMGPKSL PVSPEALTLA RWIYRSYRIH TGGELFRVDS  720
QAGDALLKRL WHHSDAIMCC SLKTNASPVF TFANQAGLDM LETTLVALQD IMLDKILDEA  780
GRKILCSEFS KIMQQGYAYL PAGICVSSMG RPVSYEQAIA WKVLNDDNSN HCLAFMFINW  840
SFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9196180.0AY919618.1 Populus trichocarpa class III HD-Zip protein 3 (HB3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012083.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2K1YI100.0A0A2K1YI10_POPTR; Uncharacterized protein
STRINGPOPTR_0011s10070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]