PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG033618.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 440aa MW: 48704.1 Da PI: 6.5042

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG033618.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25	3.3e-08	345	385	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L CCG033618.1 345 ARQRRERISDRIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 385 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.939	336	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-14	342	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.1E-13	342	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.24E-11	342	390	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.0E-12	344	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-5	345	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MGWDVDSQVL TNSSSLWSNQ QHDSVDLGED IFHQIQELQK TQTSAPQLNS GSERHQEVTR 60 LVANTMLAKS SGAGTICNWG EYPSAQELYS SSLINKPYSV TCMADFSIGG QPRINTNGLQ 120 NSKACVSTGS LESLDCLLSA TNSNTDTSVE DDGISMIFSD CRNLWNFAPN SSAAVSSGES 180 ENNTCNPRNK EMHCPVSELD ETVSHCSSDQ YGKNRDCLQT KPVSTKRSND HCSELEMGLK 240 HPFFNILQSE CSYQEGGFRL ISDNPPKSKK PRSDKRPSSS NINFQQPSSS ISSSIEEPDP 300 EAIAQMKEMI YRAAAFRPVN LGLEVAEKPK RKNVRISLDP QTVAARQRRE RISDRIRVLQ 360 RLVPGGSKMD TASMLDEAAN YLKFLRSQVK ALENLGHKLD SVNCSQPPNI AFSSLPFNHS 420 FPLQNHFPFQ NPNHIHPSQG

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MGWDVDSQVL TNSSSLWSNQ QHDSVDLGED IFHQIQELQK TQTSAPQLNS GSERHQEVTR  60
LVANTMLAKS SGAGTICNWG EYPSAQELYS SSLINKPYSV TCMADFSIGG QPRINTNGLQ  120
NSKACVSTGS LESLDCLLSA TNSNTDTSVE DDGISMIFSD CRNLWNFAPN SSAAVSSGES  180
ENNTCNPRNK EMHCPVSELD ETVSHCSSDQ YGKNRDCLQT KPVSTKRSND HCSELEMGLK  240
HPFFNILQSE CSYQEGGFRL ISDNPPKSKK PRSDKRPSSS NINFQQPSSS ISSSIEEPDP  300
EAIAQMKEMI YRAAAFRPVN LGLEVAEKPK RKNVRISLDP QTVAARQRRE RISDRIRVLQ  360
RLVPGGSKMD TASMLDEAAN YLKFLRSQVK ALENLGHKLD SVNCSQPPNI AFSSLPFNHS  420
FPLQNHFPFQ NPNHIHPSQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	345	350	RQRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011012055.1	0.0	PREDICTED: transcription factor bHLH87
Refseq	XP_011012056.1	0.0	PREDICTED: transcription factor bHLH87
Swissprot	Q8S3D2	1e-89	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A2K2C088	0.0	A0A2K2C088_POPTR; Uncharacterized protein
STRING	POPTR_0001s19250.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	4e-71	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]