PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033612.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 118aa    MW: 13214.6 Da    PI: 11.1537
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033612.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66.3e-15487184
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkl 84
                 f k+l++ dv+k  rl++p kf+++     gg     ++   +de g+ W + +++ r++  + vlt+GWk F ++++Lk+gD v F  
  CCG033612.1  4 FSKILSKTDVNK--RLTVPIKFLKSLpsfdGG---HAVKFEARDEGGEAWAFLCSVrRRGHPKPVLTRGWKAFINSKKLKTGDKVSFIK 87
                 778996666665..59*******999*87433...45789999***********8844444459**********************973 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.8832104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-17392IPR015300DNA-binding pseudobarrel domain
CDDcd100172.11E-16385No hitNo description
SuperFamilySSF1019362.55E-14399IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.8E-74112IPR003340B3 DNA binding domain
PfamPF023625.2E-12489IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MASFSKILSK TDVNKRLTVP IKFLKSLPSF DGGHAVKFEA RDEGGEAWAF LCSVRRRGHP  60
KPVLTRGWKA FINSKKLKTG DKVSFIKCKN RATAKTSYRV RAEKEIKIFG AIIGYAPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15477RRRGHPKPVLTRGWKAFINSKKLK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012049.11e-81PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLA0A3N7GMC51e-76A0A3N7GMC5_POPTR; Uncharacterized protein
STRINGPOPTR_0012s02030.17e-77(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34390.12e-09auxin response factor 22