PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG033611.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 135aa MW: 15630.4 Da PI: 10.9852 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.3 | 9.7e-12 | 15 | 102 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 f kvlt+ d +rl+lp kf++ +g++ + + desg +W+++++ rkk+ vl+k W Fv+ ++Lk+gD v F ++++ CCG033611.1 15 FSKVLTKTDIR--KRLSLPLKFFKPLpslKGSHVR--DFPAIDESGFVWTFQCSTRKKGHPkPVLSKDWLAFVRHKELKVGDRVKFFKEKDQ 102 66777554444..469*******888977555555..68899***********765554447**********************99755443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.2E-16 | 5 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.42E-14 | 11 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.009 | 15 | 112 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.42E-14 | 15 | 103 | No hit | No description |
Pfam | PF02362 | 1.7E-8 | 15 | 106 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MQQSKQKKKK ETSKFSKVLT KTDIRKRLSL PLKFFKPLPS LKGSHVRDFP AIDESGFVWT 60 FQCSTRKKGH PKPVLSKDWL AFVRHKELKV GDRVKFFKEK DQSGTATPFF RVEAEKEIKI 120 FGVIFGYSPI LAPFP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011012048.1 | 2e-92 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | B9I5A2 | 4e-76 | B9I5A2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s02070.1 | 7e-77 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |