PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033536.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 500aa    MW: 55187.1 Da    PI: 6.0259
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033536.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS332.11e-1011094931374
         GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal...ppsetsekn......sseelaalklfse 86 
                  lv+lL+++Aea+++  ++  la+ +L rl+el+sp++ ++m+Rlaayft AL+  l +++ +  +     p  + ++++      + ++laa++l+++
  CCG033536.1 109 LVHLLIAAAEALTDlnKNSDLARVILVRLKELVSPNDgTNMERLAAYFTDALQGLLEGTGGKHHSVTnngPYHHHHRDDpqqhhhQNDALAAFQLLQD 206
                  68***********9556667************8887669*****************9955443333311133333333366777899999******** PP

         GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                  +sP++kf+h+taNqaIleav+ ++++Hi+D+di++G+QW++L+qaL sR++gpp  +lRiT++++  s+  s  +++etg+rL  fA+++g pf+f+ 
  CCG033536.1 207 MSPYVKFGHFTANQAILEAVADDRKIHIVDYDIMEGIQWASLMQALVSRKDGPPtpHLRITAMSRGGSNrrSIGTVQETGRRLVAFAASIGQPFSFHQ 304
                  **************************************************776556********9777788999************************ PP

         GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpr 277
                     ++ e++++++L++ +gE l+ n++l+l ++  +  ++     ++L+  k+l+P+++++ve+e+   +++ F+ rf+++l++ysa++ds+ea++p 
  CCG033536.1 305 CRLDSDETFRPSALKLVKGEPLVMNCMLHLPHFSYRAPDSV---ASFLSGAKTLNPRLITMVEEEVGPiGDGGFVGRFMDSLHHYSAFYDSMEAGFPM 399
                  9999****************************985555555...59*******************9988***************************** PP

         GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                  + ++r+ vEr++lg++i   +a   ++   r e++  W e+l + GF+pv++s  + +qaklll  ++ dgyrvee  s+ lvlgWk+r+L+s+S W+
  CCG033536.1 400 QGRARALVERVILGPRIAGSLARIYRA---RGEEVCPWGEWLAAGGFQPVKVSFANHCQAKLLLGVFN-DGYRVEELaSNRLVLGWKSRRLLSASIWT 493
                  **************************9...888889********************************.******876999****************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.35483473IPR005202Transcription factor GRAS
PfamPF035143.5E-99109493IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MAMAIDGTQF ELDFSGYSST TTTATTISTE NDHGHGCNWN DWSPMVDWEA LSGPHDDFQG  60
LIDSMMDDGA LMNQSSRLTP DTSNSMSTSD TVFVDEETSC SNDFKGLRLV HLLIAAAEAL  120
TDLNKNSDLA RVILVRLKEL VSPNDGTNME RLAAYFTDAL QGLLEGTGGK HHSVTNNGPY  180
HHHHRDDPQQ HHHQNDALAA FQLLQDMSPY VKFGHFTANQ AILEAVADDR KIHIVDYDIM  240
EGIQWASLMQ ALVSRKDGPP TPHLRITAMS RGGSNRRSIG TVQETGRRLV AFAASIGQPF  300
SFHQCRLDSD ETFRPSALKL VKGEPLVMNC MLHLPHFSYR APDSVASFLS GAKTLNPRLI  360
TMVEEEVGPI GDGGFVGRFM DSLHHYSAFY DSMEAGFPMQ GRARALVERV ILGPRIAGSL  420
ARIYRARGEE VCPWGEWLAA GGFQPVKVSF ANHCQAKLLL GVFNDGYRVE ELASNRLVLG  480
WKSRRLLSAS IWTSPSDPDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5212649634382Protein SCARECROW
5b3h_A1e-5212649633381Protein SCARECROW
5b3h_D1e-5212649633381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027574.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
RefseqXP_011027579.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLB9GUD30.0B9GUD3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s08660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-163GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]