PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033522.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 343aa    MW: 37500 Da    PI: 6.9966
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033522.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-06104121926
                  GGGTS--TTTTT-SS-SS CS
      zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                  +   G+C+y ++C+FaHg
  CCG033522.1 104 WEDLGHCRYASNCQFAHG 121
                  6667*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-893125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.26E-595125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.47496123IPR000571Zinc finger, CCCH-type
PfamPF134562.6E-6285338No hitNo description
Gene3DG3DSA:3.30.420.101.1E-5285339IPR012337Ribonuclease H-like domain
CDDcd062229.17E-10286342No hitNo description
SuperFamilySSF530984.05E-6287338IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MESLNKAVNK DSILVAYLRG GVGSPMKSPG GDRFSRNYQR RSSGSSRSPL SPLENMKTPM  60
VDEDEVLVMD GVLVSSLVGS GSSSNSSSSS SGKSVYKKEL RRAWEDLGHC RYASNCQFAH  120
GNDEFHPSGF SIKNKELVHA CKSHAASPRS SPYVQKCRFL PSAMTSAAVA AKQAASPAIP  180
EYTSIRPTII TSEKSSKNST TLISTPDEFG RTYISIRPDH SNKIPTASVK SEDSRMDITT  240
TVCSDYWSPQ DDGIDIALPH QTDKGISREE VNAYIHSVPY VKVCQGGMGG LIRDEEDQWL  300
HGLIGRKTNM EAELQAIRLG LELIWSLDRD QVTVTTDSFE ALI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027558.10.0PREDICTED: zinc finger protein zfs1-like
TrEMBLA0A3N7EQQ71e-157A0A3N7EQQ7_POPTR; Uncharacterized protein
STRINGPOPTR_0005s19930.11e-124(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117801416