PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033467.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 24935.5 Da    PI: 7.7039
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033467.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.5e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien+snrqvtfskRr gi+KKA+E+ vLCda+v+++if+s+g+++ey+s
  CCG033467.1  9 KRIENSSNRQVTFSKRRSGIIKKAKEITVLCDAQVSLVIFASSGRMHEYCS 59
                 79***********************************************96 PP
2K-box69.88.5e-2471169199
        K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  yqk+sgk+l++ak+e+l++e++++kke+e++q e+Rhl+G+d++sL +keL+ +e+ L+++l  +R+k++e+  +  ++ +   +e ++ +  L+++ 
  CCG033467.1  71 YQKQSGKRLWDAKHENLSNEIDRIKKENESMQIELRHLKGQDISSLPHKELMAIEEVLDTGLAAVRKKQMEFHSMLEQNEKILDEEFKHLQFVLTQQQ 168
                  899********************************************************************999999999999999999999999887 PP

        K-box  99 e 99 
                  +
  CCG033467.1 169 Q 169
                  6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.478161IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-39160IPR002100Transcription factor, MADS-box
CDDcd002654.37E-41280No hitNo description
SuperFamilySSF554552.35E-35296IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-283859IPR002100Transcription factor, MADS-box
PfamPF014866.5E-1482162IPR002487Transcription factor, K-box
PROSITE profilePS5129713.00184170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT FSKRRSGIIK KAKEITVLCD AQVSLVIFAS SGRMHEYCSP  60
STTVVDLLDK YQKQSGKRLW DAKHENLSNE IDRIKKENES MQIELRHLKG QDISSLPHKE  120
LMAIEEVLDT GLAAVRKKQM EFHSMLEQNE KILDEEFKHL QFVLTQQQQE MAMEENAMEM  180
ENAYHQQRVR DYNSQVPFAF RVQPIQPNLQ ERM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-17191183MEF2 CHIMERA
6bz1_B3e-17191183MEF2 CHIMERA
6bz1_C3e-17191183MEF2 CHIMERA
6bz1_D3e-17191183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0291720.0EU029172.1 Populus deltoides MADS box transcription factor (PI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027462.11e-158PREDICTED: floral homeotic protein PMADS 2-like isoform X1
SwissprotQ0HA251e-120MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLB9GU031e-151B9GU03_POPTR; Uncharacterized protein
STRINGPOPTR_0002s07920.11e-151(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.15e-83MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]