PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033423.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 585aa    MW: 65532.1 Da    PI: 4.805
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033423.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS449.22.6e-1372165852374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL+ecA+a+s+g+ e+a++l+++l++l+s +gdp qR+aay++e+Laar+a+s++ lykal+++e +   ss++laa+++++e++P++kf++++aN
  CCG033423.2 216 RRLLFECANAISEGNIEKASTLINELRQLVSIQGDPPQRIAAYMVEGLAARMAESGKYLYKALKCKEPP---SSDRLAAMQILFEICPCFKFGFMAAN 310
                  689*****************************************************************9...9************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   a+ ea++ge+rvHiiDfdi+qG Q+++L+q+La+++++ p+lR+Tgv++pes+      l+ +g+rL+k+Ae+l+v+fef++ va++++ +++++L+
  CCG033423.2 311 GAMIEAFKGERRVHIIDFDINQGSQYITLIQTLANQQGKLPHLRLTGVDDPESVqrPVGGLRIIGQRLEKLAEALKVSFEFHA-VASKTSLVNPSMLN 407
                  ****************************************************99888899***********************.7************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  +kpgEal+Vn+++qlh+++desvs+ +erd++L++ ksl+Pk+v+vveq++++n+++F+ rf+ea +yysa+fdsl+a+lpres++r +vE+++l+r+
  CCG033423.2 408 CKPGEALIVNFAFQLHHMPDESVSTVNERDQLLRMAKSLNPKLVTVVEQDVNTNTAPFFPRFTEAYNYYSAVFDSLDATLPRESQDRLNVEKQCLARD 505
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ivn+vaceg+er+er e ++kWr+r+++aGF++ +++ ++++ ++ l++++ ++ y++++e g+l +gW+d++L+++SaW+
  CCG033423.2 506 IVNIVACEGEERIERYEVAGKWRARMMMAGFTSCSITPNVVDMIRKLIKEYCDR-YMLKQEVGALHFGWEDKSLIVASAWK 585
                  ****************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.313189566IPR005202Transcription factor GRAS
PfamPF035149.1E-135216585IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MSLVGPAELS ATPYGNHKLY SLKGSNDNSG LSAQIFCPDK RQNMYMTDSY SIESYEKYFL  60
DSPTEELIQP SSSGISGNSA PPQGTSSLQL RKNLVSSMSP QDDPYDAYFT LTTPCDGYQF  120
NSESDYLDIE SPDPLNYDEY KMKLKLQELE RALLNDNDED GMFGNSQSME MDGEWSDPIQ  180
NGMHHDSPKE SSSSDSSLSS ISSNKEVSQL SPRTPRRLLF ECANAISEGN IEKASTLINE  240
LRQLVSIQGD PPQRIAAYMV EGLAARMAES GKYLYKALKC KEPPSSDRLA AMQILFEICP  300
CFKFGFMAAN GAMIEAFKGE RRVHIIDFDI NQGSQYITLI QTLANQQGKL PHLRLTGVDD  360
PESVQRPVGG LRIIGQRLEK LAEALKVSFE FHAVASKTSL VNPSMLNCKP GEALIVNFAF  420
QLHHMPDESV STVNERDQLL RMAKSLNPKL VTVVEQDVNT NTAPFFPRFT EAYNYYSAVF  480
DSLDATLPRE SQDRLNVEKQ CLARDIVNIV ACEGEERIER YEVAGKWRAR MMMAGFTSCS  540
ITPNVVDMIR KLIKEYCDRY MLKQEVGALH FGWEDKSLIV ASAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6522158425378Protein SCARECROW
5b3h_A2e-6522158424377Protein SCARECROW
5b3h_D2e-6522158424377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164550.0AC216455.1 Populus trichocarpa clone POP032-C02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027392.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2K2BEX10.0A0A2K2BEX1_POPTR; Uncharacterized protein
STRINGPOPTR_0002s07430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]