PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG033391.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 480aa MW: 54552.3 Da PI: 4.4873

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG033391.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	256.5	9.6e-79	115	474	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++lLl Ae+v++++ +l ++++a+l++l + g++++Rla +ft++L+ + +e+ l p++ + +++ +++++++++e+sP++kf+h+ CCG033391.1 115 TDLLLMGAEVVEAQNWTLSSKIIAKLRNLlldGENGGSSFNRLALFFTQGLHYKSIT-APEM---LLPRPGQ--RQQYNMSSFQVLQELSPYVKFAHF 206 689999********************9884455569*********988776.3444...3444443..367788999*********** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 taNqaIle+++g++++HiiDfdi++G+QWp+L+ L+ R++ s+++T++ ++++ ++++tg+rL+++A+++++pf f+ + +l+ e++ CCG033391.1 207 TANQAILESTQGDQEIHIIDFDIMEGIQWPPLMVDLTMRKDV--SFKVTAIIG-DQQDVAAVQQTGRRLKEYADSINLPFVFKQM-----MMLNEEDF 296 **********************************9655..9*988.55799********************95.....44555555 PP GRAS 195 rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsl.eaklpreseerikvE 286 + + g++l+Vn++++ +++++s s+ + ++L v +lsPk+vv+ve+e + s++e f+ea+++y++l dsl ++ +++++ e + +E CCG033391.1 297 ESVEvGDTLVVNCMIHQLHMPNRSFSSIK---TFLGGVSRLSPKLVVLVEEElysfYKFPYMSYVEFFCEAIHHYTTLSDSLvSSFVSANEMELKLIE 391 44444******99999988888877...****************44332335569999************88888888899999 PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +e+lg +iv+ v++ e++er W+e + + GFkpvpls+++++qa+ l++ ++++ + v++e+ l l+Wk+rpL+++S W CCG033391.1 392 KEYLGVKIVDSVSQFPCEKKERLL----WEEGFAAlKGFKPVPLSSSNVSQANFLVSLFSGR-FWVQHEKCRLSLCWKSRPLTTASIW 474 ****************888887....99868*******************88.*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	36.361	88	456	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-76	115	474	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MEFEQLHHSI SPGSTQSIHE FSLESVFSLQ SEDSIVLSAI QDDALYDHCM ERLLEIETEL 60 MDFSSLTQDN VICIESSDDV LFELGETTGD VSLLKEENSL LKGIHEELLE DSSLTDLLLM 120 GAEVVEAQNW TLSSKIIAKL RNLLLDGENG GSSFNRLALF FTQGLHYKSI TAPEMLLPRP 180 GQRQQYNMSS FQVLQELSPY VKFAHFTANQ AILESTQGDQ EIHIIDFDIM EGIQWPPLMV 240 DLTMRKDVSF KVTAIIGDQQ DVAAVQQTGR RLKEYADSIN LPFVFKQMMM LNEEDFESVE 300 VGDTLVVNCM IHQLHMPNRS FSSIKTFLGG VSRLSPKLVV LVEEELYSFY KFPYMSYVEF 360 FCEAIHHYTT LSDSLVSSFV SANEMELKLI EKEYLGVKIV DSVSQFPCEK KERLLWEEGF 420 AALKGFKPVP LSSSNVSQAN FLVSLFSGRF WVQHEKCRLS LCWKSRPLTT ASIWVPKSEK

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MEFEQLHHSI SPGSTQSIHE FSLESVFSLQ SEDSIVLSAI QDDALYDHCM ERLLEIETEL  60
MDFSSLTQDN VICIESSDDV LFELGETTGD VSLLKEENSL LKGIHEELLE DSSLTDLLLM  120
GAEVVEAQNW TLSSKIIAKL RNLLLDGENG GSSFNRLALF FTQGLHYKSI TAPEMLLPRP  180
GQRQQYNMSS FQVLQELSPY VKFAHFTANQ AILESTQGDQ EIHIIDFDIM EGIQWPPLMV  240
DLTMRKDVSF KVTAIIGDQQ DVAAVQQTGR RLKEYADSIN LPFVFKQMMM LNEEDFESVE  300
VGDTLVVNCM IHQLHMPNRS FSSIKTFLGG VSRLSPKLVV LVEEELYSFY KFPYMSYVEF  360
FCEAIHHYTT LSDSLVSSFV SANEMELKLI EKEYLGVKIV DSVSQFPCEK KERLLWEEGF  420
AALKGFKPVP LSSSNVSQAN FLVSLFSGRF WVQHEKCRLS LCWKSRPLTT ASIWVPKSEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-41	122	478	27	382	Protein SCARECROW
5b3h_A	2e-41	122	478	26	381	Protein SCARECROW
5b3h_D	2e-41	122	478	26	381	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011012014.1	0.0	PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBL	U5FEG1	0.0	U5FEG1_POPTR; Uncharacterized protein
STRING	POPTR_0019s02540.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13148	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	2e-53	GRAS family protein