PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033313.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 23629.1 Da    PI: 10.5668
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033313.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.59.9e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien ++rqvtfskRrng+lKKA+ELS+LCdaev++iifs+tgk+y ++s
  CCG033313.1  9 KRIENPTRRQVTFSKRRNGLLKKAFELSILCDAEVSLIIFSPTGKFYQFAS 59
                 79***********************************************86 PP
2K-box69.51.1e-2380171899
        K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  + +++  e +++e++ L+k i++ + ++Rh +Ged+e L +keL+qLe+qL+++++++RskK ++  eq++ l+ k++++qeen +L+k+l 
  CCG033313.1  80 DSHTRSLEFWRREIEELQKTINETEAQLRHCIGEDIEMLGMKELKQLERQLKTGVERVRSKKLRIAAEQVNWLKGKQRSIQEENARLKKRLH 171
                  46778899********************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.366161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.76E-39276No hitNo description
SuperFamilySSF554553.53E-33290IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-303859IPR002100Transcription factor, MADS-box
PfamPF014867.3E-2281170IPR002487Transcription factor, K-box
PROSITE profilePS5129712.71586176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MGRGKVELKR IENPTRRQVT FSKRRNGLLK KAFELSILCD AEVSLIIFSP TGKFYQFASH  60
EMERTIARYR SEAGLSGPND SHTRSLEFWR REIEELQKTI NETEAQLRHC IGEDIEMLGM  120
KELKQLERQL KTGVERVRSK KLRIAAEQVN WLKGKQRSIQ EENARLKKRL HELHDGNISS  180
RIWEPTARKA IQLRTIDDGS HH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-22185182MEF2C
5f28_B1e-22185182MEF2C
5f28_C1e-22185182MEF2C
5f28_D1e-22185182MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 (By similarity). {ECO:0000250}.
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 (By similarity). {ECO:0000250}.
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1. {ECO:0000269|PubMed:10765981}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044117.11e-147PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X2
SwissprotQ6R4S34e-46CAL_BRARR; Transcription factor CAULIFLOWER
SwissprotQ6R4S64e-46CAL_BRARC; Transcription factor CAULIFLOWER
SwissprotQ9SBK95e-46CAL_BRARP; Transcription factor CAULIFLOWER
TrEMBLB9I3T71e-137B9I3T7_POPTR; Uncharacterized protein
STRINGGorai.007G043400.12e-83(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.13e-48MIKC_MADS family protein
Publications ? help Back to Top
  1. Li XF,Shen RJ,Liu PL,Tang ZC,He YK
    Molecular characters and morphological genetics of CAL gene in Chinese cabbage.
    Cell Res., 2000. 10(1): p. 29-38
    [PMID:10765981]