PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG033275.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Dof | ||||||||
Protein Properties | Length: 320aa MW: 35176.4 Da PI: 7.869 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.6 | 6.5e-39 | 31 | 90 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s CCG033275.1 31 NHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRS 90 57899****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-27 | 29 | 89 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.8E-33 | 33 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.618 | 35 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 37 | 73 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MQEIHSIGGG GRLFSGGGGG DRRLRPHHHQ NHQALKCPRC DSLNTKFCYY NNYNLSQPRH 60 FCKSCRRYWT KGGVLRNVPV GGGCRKTKRS KLKQNTPSTT SDTITTSSTR PQELQEKHQR 120 RDHVSSNSHS SSESSSLTAT NNTNANTAVE AVSALSVNSV SNNLLNGIVE SKSFPRGDMN 180 PSFEPALLEQ GSDCGIFSEI GSFTSLITST NDLSFGFSNT TNQQQQQGLE HHVQNNQNQQ 240 QWQNQHQEMT GGLIDQTIHA ELSALPSSSR STENTGGGFG ALDWQLGSGD QAGGFFYLPN 300 TVDQAYWSQS QWNDMTAYLP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 9 | 17 | GGRLFSGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148034 | 0.0 | EF148034.1 Populus trichocarpa clone WS0126_P16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011011961.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.4-like | ||||
TrEMBL | A9PI21 | 0.0 | A9PI21_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s03520.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5998 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 1e-38 | OBF binding protein 4 |