PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG033105.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 26736.4 Da PI: 6.6751 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.2 | 5.3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+e+ss CCG033105.2 9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFSS 59 68***********************************************96 PP | |||||||
2 | K-box | 46.9 | 1.2e-16 | 94 | 167 | 21 | 94 |
K-box 21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 ++L ke+ + +++R++ GedL L++ eL qLe+ Le +l+ + +kK e ++++i +lq+k e+++ k CCG033105.2 94 CSRLSKEVAEKSHQLRQMRGEDLRGLNIDELLQLEKSLEAGLSCVIEKKGEKIMNEITDLQRKVVEISNGRKHV 167 56888888888899**************************************************9999877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.501 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.43E-40 | 2 | 77 | No hit | No description |
PRINTS | PR00404 | 2.5E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-31 | 3 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.9E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.771 | 87 | 182 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 6.6E-13 | 94 | 162 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MARERIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFSSS 60 SMKEILERHN LHSKNLEKLE QPSLELQLVE DSTCSRLSKE VAEKSHQLRQ MRGEDLRGLN 120 IDELLQLEKS LEAGLSCVIE KKGEKIMNEI TDLQRKVVEI SNGRKHVTAD SENVGYEEGQ 180 SSESVTNVCN SNGPLHDYES SDTSLKLGSF SLKGWAKIDL YLGASMLSCP SSLSPWVKG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 6e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 6e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 6e-20 | 1 | 69 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00272 | DAP | Transfer from AT2G22540 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011021843.1 | 1e-145 | PREDICTED: MADS-box protein SVP | ||||
Refseq | XP_011021844.1 | 1e-145 | PREDICTED: MADS-box protein SVP | ||||
Refseq | XP_011021845.1 | 1e-145 | PREDICTED: MADS-box protein SVP | ||||
Swissprot | Q9FVC1 | 3e-99 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A385JI54 | 1e-142 | A0A385JI54_POPTO; Short vegetative phase | ||||
TrEMBL | B9HFR5 | 1e-142 | B9HFR5_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_015543m | 1e-123 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF890 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-101 | MIKC_MADS family protein |