PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033058.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARR-B
Protein Properties Length: 658aa    MW: 71277.5 Da    PI: 5.8705
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033058.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.52.9e-28224277155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  CCG033058.1 224 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 277
                  79*******************.********************************8 PP
2Response_reg76.59.9e-26401481109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + ++ll+++l +  y +v++++++++al+ll+e++  +D++l D+ mp+mdG++ll+     e++lp+i+++a g  + + + +k Ga 
   CCG033058.1  40 VLVVDDDVTCLRLLEKMLCRCLY-NVTTCSQATAALKLLRERKgcFDVVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSADGRTSAVMRGIKHGAC 134
                   89*********************.****************************************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
   CCG033058.1 135 DYLIKPIREEELKN 148
                   ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.2E-16212644IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23004.2E-4237171No hitNo description
SuperFamilySSF521721.25E-3537166IPR011006CheY-like superfamily
SMARTSM004488.7E-2938150IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.98239154IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.8E-2340148IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.17E-2741154No hitNo description
Gene3DG3DSA:1.10.10.605.9E-30221282IPR009057Homeodomain-like
PROSITE profilePS5129410.898221280IPR017930Myb domain
SuperFamilySSF466891.79E-19222281IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-24224277IPR006447Myb domain, plants
PfamPF002499.5E-7226275IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MAALQRVASS FSTSASSYGS CKGAGADLMF SDQFPAGLRV LVVDDDVTCL RLLEKMLCRC  60
LYNVTTCSQA TAALKLLRER KGCFDVVLSD VHMPDMDGFK LLELVGLEMD LPVIMMSADG  120
RTSAVMRGIK HGACDYLIKP IREEELKNIW QHVIRKKWNE NKEQEHSGSF EDNDWYKRGN  180
DDTENASSVN EGAEGVLKGQ KKRNIAKEED DNELEIDDPS ASKKPRVVWS VELHQQFVSA  240
VNQLGIDKAV PKRILELMNV PGLTRENVAS HLQKFRLYLK RLSGVAQQGG ISNTFCGPLD  300
SNVKVNPLGR FDIQALAASS QIPPQTLAAL HAELFGRPTG SLVATVDQPA LLQASMQGLK  360
CIPAEHAVAF GQPLVKCQSN ISKHFPRNVM SVEDIASGFG AWSSNSVGTV GSSSNLGGMN  420
SQNSNMLMDI LQQQPPQQSS LSEPSRSINV QPSCLVVPSQ PPATFQVGNS PASVDQNCSY  480
NRSAMIDYNL LSAQSNNSSL NVGQILNADL KTTGVSGYSG SVSISPLSPC SVDPDNTSQQ  540
GQSSTMAIRA VRQLPGLGPN ISNFQGSYSA KSSEVLDQRP LRNLGFVAKC TSIPSRLAVD  600
EFESTMSSLD HEKSYMEISG NKVKQEPNIE FTDNARVGIP ISQQVPPAPS DLTSVFTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-23220283164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081410.0FN908141.1 Populus x canadensis mRNA for putative B-type response regulator 16 (rr16 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021760.10.0PREDICTED: two-component response regulator ARR1-like
SwissprotQ8H7S71e-172ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLB9HVU50.0B9HVU5_POPTR; Uncharacterized protein
STRINGPOPTR_0010s11600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-123response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]