PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG033049.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HSF

Protein Properties

Length: 392aa MW: 44661.8 Da PI: 4.453

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG033049.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.9	1e-35	12	104	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Flkk ye+++de+++++isws++++sfv++d++ef+ ++LpkyFkhsn +SFvRQLn+YgF+k+++++ weF+++ F +g+k+ll++i CCG033049.1 12 FLKKCYEMVDDESTNSIISWSQTNDSFVIWDMTEFSVHLLPKYFKHSNSSSFVRQLNIYGFRKIDTDQ---------WEFANDGFIRGQKHLLKNIC 99 9**************************************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ CCG033049.1 100 RRKNS 104 997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	2.04E-33	8	101	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.8E-36	8	101	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.2E-54	8	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.4E-18	12	35	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.7E-30	12	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.4E-18	50	62	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	51	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.4E-18	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MVKSSESGVA PFLKKCYEMV DDESTNSIIS WSQTNDSFVI WDMTEFSVHL LPKYFKHSNS 60 SSFVRQLNIY GFRKIDTDQW EFANDGFIRG QKHLLKNICR RKNSQGTDNR KSVQQQDNSI 120 EHCENVENVG LWKEVENLKT GKHALTQELV KLRQHQETAD NKLLLLRDRL QGMEKNQQQM 180 LSFLVMAVQS PGFLAQLLNK KENNWRIAEP GSIVEQGADD AEQLASEGMI VRYQPPVDEM 240 FEPVHAPPIG PENPQESNPS SDGMKDFFVS PDFMELLMDE NLGLENHTSF VLPELADDGS 300 WEQLLLANPF IDNIKDTKPG SEESTDTETD TGTTISGMQL ERSQSFEYLI EQMEKSNDLE 360 SKATDEGPHF EKSHKLEILT EQMGLLASEP NH

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MVKSSESGVA PFLKKCYEMV DDESTNSIIS WSQTNDSFVI WDMTEFSVHL LPKYFKHSNS  60
SSFVRQLNIY GFRKIDTDQW EFANDGFIRG QKHLLKNICR RKNSQGTDNR KSVQQQDNSI  120
EHCENVENVG LWKEVENLKT GKHALTQELV KLRQHQETAD NKLLLLRDRL QGMEKNQQQM  180
LSFLVMAVQS PGFLAQLLNK KENNWRIAEP GSIVEQGADD AEQLASEGMI VRYQPPVDEM  240
FEPVHAPPIG PENPQESNPS SDGMKDFFVS PDFMELLMDE NLGLENHTSF VLPELADDGS  300
WEQLLLANPF IDNIKDTKPG SEESTDTETD TGTTISGMQL ERSQSFEYLI EQMEKSNDLE  360
SKATDEGPHF EKSHKLEILT EQMGLLASEP NH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	2e-23	4	104	12	123	Heat shock factor protein 1
5d5u_B	2e-23	4	101	21	129	Heat shock factor protein 1
5d5v_B	2e-23	4	101	21	129	Heat shock factor protein 1
5d5v_D	2e-23	4	101	21	129	Heat shock factor protein 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147413	0.0	EF147413.1 Populus trichocarpa clone WS01230_L11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011021749.1	0.0	PREDICTED: heat stress transcription factor A-8
TrEMBL	A0A2K1YRV8	0.0	A0A2K1YRV8_POPTR; Uncharacterized protein
STRING	POPTR_0010s11490.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10419	29	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67970.1	1e-108	heat shock transcription factor A8