PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG032997.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C3H

Protein Properties

Length: 736aa MW: 81226.8 Da PI: 5.6663

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG032997.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.4	4.5e-07	122	144	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +lC ff++ G C Gd+C F+Hgp CCG032997.1 122 VLCIFFQQ-GMCLKGDKCAFSHGP 144 79****.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.803	27	56	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0018	28	55	IPR000571	Zinc finger, CCCH-type
Pfam	PF15663	1.9E-11	28	82	No hit	No description
PROSITE profile	PS50103	10.746	58	84	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.048	60	83	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.267	118	145	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.9E-5	119	144	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.4E-6	119	143	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-4	122	144	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	0.0056	124	143	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence Send to blast
MVAATQPQPP PPTPTASTRT SAEEEALKRN TDCVYFLASP LTCKKGSECE YRHSEYARVN 60 PRDCYFWLNG NCMNPKCGFR HPPLDGLFGN QTTASAGPSL PPSHAAAAAA THAPHNSGKQ 120 GVLCIFFQQG MCLKGDKCAF SHGPNHASNR VSQTMALTPG TEAHPPKKAF GGLQKCTQEQ 180 KLPQVNLSKA VEAPTVAKPV SKAEIASARN SAGVARNVVP PKSTDDEVPR YKASNLPPEV 240 NGNSSRSNQL HLSRVADDHV NHNGKDADEY LRESSPGFDV LVDDELRDSD YYHGEDQFGR 300 TIVHEGRNLN SVDEYGRGHP ADYGSLPDDQ ERYGDPRGYD PYEHMQGQHA WEQHRVSSER 360 MLVAPAHLER RGYSKADSPE HIEGSDLRYL LSKQRRVNGL RSVVSNDFVP GNHVEDRGYQ 420 GSSRRDSHHL LSHESSISSR LRGRIKLPGG SPNEGGDLHA EREIDRGRNR GRLSPVRPLI 480 SSQQGRFRDR MKARVEEDYN EGRNFRGPHV RRELVDDKIT NFAAPKSLAE LRGGKNAEGK 540 SQQSLGKRKY LEDHPPSDAD LSFEGPMPLS EILKRKRGGG AAASGSRISS VIEDGNNQKE 600 SRQNLTSNSN KAVAETQSGF SSVLKDDDSS QMLKNKESNF APDDALGTEG ENIEIVLGKS 660 SQLPNPSEIE TEDGIVAHDG MEDHDYEADD QRDGDYEYEQ ADEGEYNYEE GENIDEEEYE 720 NEDGDDFAKK IGVVFS

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence Send to blast

MVAATQPQPP PPTPTASTRT SAEEEALKRN TDCVYFLASP LTCKKGSECE YRHSEYARVN  60
PRDCYFWLNG NCMNPKCGFR HPPLDGLFGN QTTASAGPSL PPSHAAAAAA THAPHNSGKQ  120
GVLCIFFQQG MCLKGDKCAF SHGPNHASNR VSQTMALTPG TEAHPPKKAF GGLQKCTQEQ  180
KLPQVNLSKA VEAPTVAKPV SKAEIASARN SAGVARNVVP PKSTDDEVPR YKASNLPPEV  240
NGNSSRSNQL HLSRVADDHV NHNGKDADEY LRESSPGFDV LVDDELRDSD YYHGEDQFGR  300
TIVHEGRNLN SVDEYGRGHP ADYGSLPDDQ ERYGDPRGYD PYEHMQGQHA WEQHRVSSER  360
MLVAPAHLER RGYSKADSPE HIEGSDLRYL LSKQRRVNGL RSVVSNDFVP GNHVEDRGYQ  420
GSSRRDSHHL LSHESSISSR LRGRIKLPGG SPNEGGDLHA EREIDRGRNR GRLSPVRPLI  480
SSQQGRFRDR MKARVEEDYN EGRNFRGPHV RRELVDDKIT NFAAPKSLAE LRGGKNAEGK  540
SQQSLGKRKY LEDHPPSDAD LSFEGPMPLS EILKRKRGGG AAASGSRISS VIEDGNNQKE  600
SRQNLTSNSN KAVAETQSGF SSVLKDDDSS QMLKNKESNF APDDALGTEG ENIEIVLGKS  660
SQLPNPSEIE TEDGIVAHDG MEDHDYEADD QRDGDYEYEQ ADEGEYNYEE GENIDEEEYE  720
NEDGDDFAKK IGVVFS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011021673.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 17-like
TrEMBL	B9HVM7	0.0	B9HVM7_POPTR; Uncharacterized protein
STRING	POPTR_0010s10850.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9227	31	37