PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG032962.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 311aa MW: 35214.5 Da PI: 6.8536 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.9 | 7.3e-18 | 81 | 134 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k CCG032962.1 81 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 134 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.3 | 3.7e-42 | 80 | 170 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr++da+k+en++L++++++L++e+ CCG032962.1 80 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFDAIKAENDALQAQNQKLHAEV 170 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.45E-19 | 65 | 138 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 76 | 136 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-17 | 79 | 140 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.10E-15 | 81 | 137 | No hit | No description |
Pfam | PF00046 | 3.2E-15 | 81 | 134 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-19 | 83 | 143 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.3E-5 | 107 | 116 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 111 | 134 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 116 | 132 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.5E-15 | 136 | 176 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MTCNGMAFFP TNFMLQISHD QDDHQPPTSL NPILPSPQDF RGVASFIGKR SSMSFSGIDA 60 CHEEGNGEDE LSDDGSQAGE KKRRLNMEQV KTLEKNFELG NKLEPERKMQ LARALGLQPR 120 QIAIWFQNRR ARWKTKQLEK DYDLLKRQFD AIKAENDALQ AQNQKLHAEV ISCKNLTHHR 180 LAIEILALKS REPTEPINLN KETEGSSCNR SENSSDIKLD ISRTPAIDSP LSNHHPTSRS 240 LFPSSSSSIR PAGVAIRPTG VAQLFQTNPS RPDIQSQKID QLVKEENLGN MFCSIEDQSG 300 FWPWLEQHHF N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 136 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011021608.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-13 isoform X1 | ||||
Swissprot | Q8LC03 | 1e-111 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | U5FYJ9 | 0.0 | U5FYJ9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s10340.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-112 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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