PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG032863.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 997aa MW: 109190 Da PI: 5.0056

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG032863.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.5	1.4e-28	598	648	1	51
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki++ CCG032863.1 598 AEKTVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINK 648 5899*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.824	581	669	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-25	601	648	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	4.6E-23	887	968	No hit	No description
SuperFamily	SSF54277	9.48E-20	887	970	No hit	No description
SMART	SM00666	8.3E-21	887	970	IPR000270	PB1 domain
PROSITE profile	PS51745	20.171	887	970	IPR000270	PB1 domain
Pfam	PF00564	6.4E-17	888	969	IPR000270	PB1 domain
CDD	cd06407	3.88E-30	888	969	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 997 aa Download sequence Send to blast
MENSFSSKEK EMGYWASPRA QMDIVTTSDG APRNSFFEDP FNSFSELMNF DMYAGWCNNS 60 SAMDQMLAPY GTPSFPSTSY PSFDAGSFAE QNSASIQETI NAAGTSYNGG DKVMLQQTNS 120 HFGYPSDSID ADDLGAKHDN GVGQQNHFPN TTYYIMSQPV GPSLDERMLR ALSLLKVSYG 180 GGILAQVWVP IRSGDQYMLS TSEQPYLLDQ MLAGFREVSR TFTFSAEVKP GVPLGLPGRV 240 FISKLPEWTS NVRYYRKAEY LRAKHAVDHE VRGSFALPIF DPDEMSCCAV LELVTVKEKP 300 DFDSEMENVC DALEAVNLRS TPPPRLLPQC LSSNKRAALS EIADVLRAVC HAHRLPLALT 360 WMPCNYTEEA VDEIIKVRVR EANSRSSGKC VLCIEGTACY VNDREMQGFV HACAEHYIEE 420 GQGIAGKAVQ SNHPFFFPDV KTYDITEYPL VHHARKYGLN AAVAIRLRST YTGDDDYILE 480 LFLPVNIKES SDQQLLLNNL SGTMQRICKS LRTVSDTEFV GQECSEVGLP KEALPSFQPI 540 SISNGSSQTA LSEGNLNSAA NLPLNVCSSK NDKIGSNSSN VQTTSGSRRQ VEKKRSTAEK 600 TVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKAN RSLRKIQTVL 660 DSVQGVEGGL KFDPTTGGFV AGVSMNQEFD HQNGFVFQAK NLSNGNSEPA NHDVVSVLPA 720 SCTDGNNSTV KVEEDECCIV SGGELKDCSV HVIDCSADSK SVAIGAGLCE QTSFGSGPWA 780 CLENDLPGSF AKAGNIGGMK NGGIILENSD SCIVPRSSLP FVAAEEMDTK MEGDDGNVER 840 NQHTCSSMTD SSNSSGSIMH GSISSSPSFE ERKHSKERTS FGDGDLKITV KARYREDIIR 900 FKFDPSAAGC LQLYEEVSKR FKLQTGTFQL KYLDDEEEWV LLVSDSDLLE CLEIMEYVGT 960 RSVKFLVRHT PFAMGSSDSS NCFLTGSSEH MGDTGNL

Sequence ? help Back to Top

Protein Sequence Length: 997 aa Download sequence Send to blast

MENSFSSKEK EMGYWASPRA QMDIVTTSDG APRNSFFEDP FNSFSELMNF DMYAGWCNNS  60
SAMDQMLAPY GTPSFPSTSY PSFDAGSFAE QNSASIQETI NAAGTSYNGG DKVMLQQTNS  120
HFGYPSDSID ADDLGAKHDN GVGQQNHFPN TTYYIMSQPV GPSLDERMLR ALSLLKVSYG  180
GGILAQVWVP IRSGDQYMLS TSEQPYLLDQ MLAGFREVSR TFTFSAEVKP GVPLGLPGRV  240
FISKLPEWTS NVRYYRKAEY LRAKHAVDHE VRGSFALPIF DPDEMSCCAV LELVTVKEKP  300
DFDSEMENVC DALEAVNLRS TPPPRLLPQC LSSNKRAALS EIADVLRAVC HAHRLPLALT  360
WMPCNYTEEA VDEIIKVRVR EANSRSSGKC VLCIEGTACY VNDREMQGFV HACAEHYIEE  420
GQGIAGKAVQ SNHPFFFPDV KTYDITEYPL VHHARKYGLN AAVAIRLRST YTGDDDYILE  480
LFLPVNIKES SDQQLLLNNL SGTMQRICKS LRTVSDTEFV GQECSEVGLP KEALPSFQPI  540
SISNGSSQTA LSEGNLNSAA NLPLNVCSSK NDKIGSNSSN VQTTSGSRRQ VEKKRSTAEK  600
TVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKAN RSLRKIQTVL  660
DSVQGVEGGL KFDPTTGGFV AGVSMNQEFD HQNGFVFQAK NLSNGNSEPA NHDVVSVLPA  720
SCTDGNNSTV KVEEDECCIV SGGELKDCSV HVIDCSADSK SVAIGAGLCE QTSFGSGPWA  780
CLENDLPGSF AKAGNIGGMK NGGIILENSD SCIVPRSSLP FVAAEEMDTK MEGDDGNVER  840
NQHTCSSMTD SSNSSGSIMH GSISSSPSFE ERKHSKERTS FGDGDLKITV KARYREDIIR  900
FKFDPSAAGC LQLYEEVSKR FKLQTGTFQL KYLDDEEEWV LLVSDSDLLE CLEIMEYVGT  960
RSVKFLVRHT PFAMGSSDSS NCFLTGSSEH MGDTGNL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU231638	1e-151	CU231638.1 Populus EST from mild drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011011865.1	0.0	PREDICTED: protein NLP8-like
Refseq	XP_011011866.1	0.0	PREDICTED: protein NLP8-like
TrEMBL	A0A2K1ZTV0	0.0	A0A2K1ZTV0_POPTR; Uncharacterized protein
STRING	POPTR_0007s01530.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein