PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032779.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 668aa    MW: 73760.9 Da    PI: 6.5746
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032779.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.35.7e-1102936682374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +++++e+A a+ +g++   +++L+r+s  +sp g++ qRl+ y++ AL++rl++     ++  ++ e     s+e++ a++l++++sP++kf++++aN
  CCG032779.1 293 KQTVIEAASAIYEGKTDVYTEILTRVSLVSSPGGNSEQRLIEYMLMALKSRLNS-----SQNTSVMELY---SKEHVDATQLLYDLSPCFKFGFMAAN 382
                  57899************************************************9.....3333333333...889999******************** PP

         GRAS 100 qaIleavege........ervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrle 187
                   aI  a+ ++        +  H++Dfdi +G+Q+++Ll+aL+  +++gp+ ++iT+v++ ++g ++e+l+ +gerL+++A++ g+++ fnv v+ +l+
  CCG032779.1 383 LAIIYATREQeqeastssNGFHVVDFDICHGGQYMNLLHALSgLQNSGPAFVKITAVAADSNGvEEERLRLVGERLSQLARRGGLNLCFNV-VSCKLS 479
                  ***999987755555444556*********************77789999*********99999**************************9.7999** PP

         GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                  +l+ e+Lr++p+EalaVn++++l+r++desvs+++ +rde+L+ vk+l P+vv+vveqe+++n+++F++r+ e+++yy alfds+e+++  +++er+k
  CCG032779.1 480 ELTRESLRCEPDEALAVNFAFKLYRMPDESVSSTEnPRDELLRRVKGLAPRVVTVVEQEMNTNTAPFMARVNESCSYYGALFDSIESTAKGDNSERAK 577
                  ******************************987766************************************************************** PP

         GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  vE+  lgr+i n vaceg++r+er+e ++kWr+r+++aGF+  pls+++a+++k+ l+  +  s g++v+ee+g +++gW++++L+++SaWr
  CCG032779.1 578 VEEG-LGRRILNSVACEGRDRVERCEVFGKWRARMGMAGFELKPLSQNIAESMKMRLSLANrvSPGFSVKEENGGVCFGWMGKTLTVASAWR 668
                  ****.****************************************************99998889**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.838266646IPR005202Transcription factor GRAS
PfamPF035142.0E-107293668IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MASGFSGGGG GGGGGVQDFY TSRSPIIPTM NLTNNHHHNP SSLPPYRTNQ IFLDQNLSSH  60
NYQQIAQHRA IFPTTTATTT LIGKRTLADF QAFQQSPPQQ NLLNQAALNN LLLRSVKPRI  120
NNNIFQQNTS PISTLDFSVS NLSPELPSLM SQRYGLPLLQ QLRPQHHQQH QQQQPPMNLI  180
SPSGIINNNR TSNNSMMPYV NMLQNQNGGN GIVMGQDREK KMLNQLQELE KQLLDDDDDN  240
QEGDAVSVIT NTNSEWSETI HNLITSSCNN PISPSPTSSS SSSFSTVTTP VSKQTVIEAA  300
SAIYEGKTDV YTEILTRVSL VSSPGGNSEQ RLIEYMLMAL KSRLNSSQNT SVMELYSKEH  360
VDATQLLYDL SPCFKFGFMA ANLAIIYATR EQEQEASTSS NGFHVVDFDI CHGGQYMNLL  420
HALSGLQNSG PAFVKITAVA ADSNGVEEER LRLVGERLSQ LARRGGLNLC FNVVSCKLSE  480
LTRESLRCEP DEALAVNFAF KLYRMPDESV SSTENPRDEL LRRVKGLAPR VVTVVEQEMN  540
TNTAPFMARV NESCSYYGAL FDSIESTAKG DNSERAKVEE GLGRRILNSV ACEGRDRVER  600
CEVFGKWRAR MGMAGFELKP LSQNIAESMK MRLSLANRVS PGFSVKEENG GVCFGWMGKT  660
LTVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-3829866724377Protein SCARECROW
5b3h_D3e-3829866724377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1469220.0EF146922.1 Populus trichocarpa clone WS01223_P18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043851.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-178SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A2K2ARG50.0A0A2K2ARG5_POPTR; GRAS family protein
STRINGPOPTR_0004s07700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-149SCARECROW-like 8