PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG032727.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 710aa MW: 80366.1 Da PI: 5.6115

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG032727.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	376.8	2.7e-115	336	706	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lL++cA+av+ gd++ a+++L+++++++s+ gd++qRla+yf++AL +rla++++ ++ + +ts +e l+a+++++ ++P+ ++s++ aN CCG032727.1 336 SSLLIQCAQAVAIGDQRTASEILQQIRQHSSSFGDANQRLAHYFANALDTRLAGTTTPTFTLFVNPRTS---AAEILKAYQVYVRACPFKRMSNFFAN 430 689*************************************************777777776555554...79******************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 ++Il+ ++++r+HiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g +e++eetg+rL++++e+++vpfe+ + +a+++e++++e+L+ CCG032727.1 431 RTILKLEKKATRLHIIDFGILYGFQWPCLIQRLSERPGGPPKLRITGIELPQPGfrPAERVEETGRRLERYCERFKVPFEYIP-IAQKWETIRYEDLK 527 *************************************************9*************************.7********* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 ++++E+++V++ ++l +l+d++ +s+rd+vLkl+++++P+++++ + + n++ F++rf eal+++s+lfd++ea++pre+e+r++ E+e gr+ CCG032727.1 528 IDKDEKVVVSCLYRLRNLPDDTIVENSARDAVLKLINEIKPDIFIHGVVNGNFNAPFFVTRFREALYHFSSLFDMFEATVPREDEHRMMFEKEQYGRD 625 ********************************************************************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 i nv+aceg++r+er et+++W++r +aGF+++pl+++ k+++++++ +++ + v+ + +++++gWk+r ++++S W+ CCG032727.1 626 IINVIACEGKARVERPETYKQWQSRNLRAGFRQLPLDQELFKDVRSVVKSEYDKDFVVDADGQWVLQGWKGRIIYALSIWK 706 ************************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.013	309	686	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.3E-113	336	706	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence Send to blast
MDTLLQEYPN SMNRFMFDHA SVSFSSNRNL FNGYKLNDTM SDPNPSFNSF NPEPPSDSTS 60 SSSSSNSCSE AYGPSNNVTL KFISDVLLEE DLEGKTCMLQ DCLALQAAEK PFYDVLGQEY 120 PHSSNQILSC FNQNFESPDN GFTWSSGIDI SNSYPAGNNL VKKSDWIFYQ ADLDLYQVQT 180 SPVLPLGRSL LGPDLHSPVH PFEVLSKGGG EADNFLSGND YFMVSSKSNS NPPDKDEGDS 240 SPNSSRGRKN HQREDSDDLE EERSKKHSAL SPAESELSEL LDEVLLCPAA QNESTQCSLL 300 GNSQNGAAGN EQRKGSNGRT TRGKKRGKKG EVVDLSSLLI QCAQAVAIGD QRTASEILQQ 360 IRQHSSSFGD ANQRLAHYFA NALDTRLAGT TTPTFTLFVN PRTSAAEILK AYQVYVRACP 420 FKRMSNFFAN RTILKLEKKA TRLHIIDFGI LYGFQWPCLI QRLSERPGGP PKLRITGIEL 480 PQPGFRPAER VEETGRRLER YCERFKVPFE YIPIAQKWET IRYEDLKIDK DEKVVVSCLY 540 RLRNLPDDTI VENSARDAVL KLINEIKPDI FIHGVVNGNF NAPFFVTRFR EALYHFSSLF 600 DMFEATVPRE DEHRMMFEKE QYGRDIINVI ACEGKARVER PETYKQWQSR NLRAGFRQLP 660 LDQELFKDVR SVVKSEYDKD FVVDADGQWV LQGWKGRIIY ALSIWKPVQE

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence Send to blast

MDTLLQEYPN SMNRFMFDHA SVSFSSNRNL FNGYKLNDTM SDPNPSFNSF NPEPPSDSTS  60
SSSSSNSCSE AYGPSNNVTL KFISDVLLEE DLEGKTCMLQ DCLALQAAEK PFYDVLGQEY  120
PHSSNQILSC FNQNFESPDN GFTWSSGIDI SNSYPAGNNL VKKSDWIFYQ ADLDLYQVQT  180
SPVLPLGRSL LGPDLHSPVH PFEVLSKGGG EADNFLSGND YFMVSSKSNS NPPDKDEGDS  240
SPNSSRGRKN HQREDSDDLE EERSKKHSAL SPAESELSEL LDEVLLCPAA QNESTQCSLL  300
GNSQNGAAGN EQRKGSNGRT TRGKKRGKKG EVVDLSSLLI QCAQAVAIGD QRTASEILQQ  360
IRQHSSSFGD ANQRLAHYFA NALDTRLAGT TTPTFTLFVN PRTSAAEILK AYQVYVRACP  420
FKRMSNFFAN RTILKLEKKA TRLHIIDFGI LYGFQWPCLI QRLSERPGGP PKLRITGIEL  480
PQPGFRPAER VEETGRRLER YCERFKVPFE YIPIAQKWET IRYEDLKIDK DEKVVVSCLY  540
RLRNLPDDTI VENSARDAVL KLINEIKPDI FIHGVVNGNF NAPFFVTRFR EALYHFSSLF  600
DMFEATVPRE DEHRMMFEKE QYGRDIINVI ACEGKARVER PETYKQWQSR NLRAGFRQLP  660
LDQELFKDVR SVVKSEYDKD FVVDADGQWV LQGWKGRIIY ALSIWKPVQE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-49	339	706	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU230854	0.0	CU230854.1 Populus EST from mild drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011042725.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	B9HPF3	0.0	B9HPF3_POPTR; Uncharacterized protein
STRING	POPTR_0009s03850.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-175	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]