PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG032726.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 649aa MW: 74058.5 Da PI: 6.7616 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 364.9 | 1.1e-111 | 275 | 645 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 ++L+ cAea gd++ a+a L+++++++sp gd++qRla+yf+++L++rla+++ l+ p +++s ++ ++ l+a+kl++ ++P+ k+++l aN+ CCG032726.1 275 TQLILCAEAAGRGDQKTASAKLKQIRQHSSPFGDANQRLAHYFANGLEERLAGTGMLLS--GPITQNS-TTAVDILNAYKLYVTICPFRKMTNLCANR 369 689**************************************************444444..4444443.569************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 +I + + +++ vHiiDf+is+G+QWp+++ + Rp+gpp++RiTg++ p++g +e++eetg+rL+++A++++vpfe+n+ +a+++e++++e+L++ CCG032726.1 370 TIARVAVKATSVHIIDFGISYGFQWPCFIYRHSLRPGGPPKIRITGIELPQPGfrPAERVEETGRRLQRLADRMKVPFEYNA-IAQKWETIQYEDLKI 466 ****************************************************9*****************************.7************** PP GRAS 197 kp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++ +E+++Vn++++ ++l+d++++ +s+rd+vLkl+k+++P+v+ + ++ ++n++ F++rf eal +ysa fd+lea++pre++er Ere++gr CCG032726.1 467 DRdrDEVIVVNCMYRFKNLPDDTMAYNSPRDAVLKLIKTINPDVFLHGVRNGSYNAPFFVTRFREALFHYSAYFDMLEANAPREDQERLLFEREMIGR 564 9999********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ nvvaceg++r+er et+++W++r + GF+++pl +++ + +k++ +++d + v+e+ ++++lgWk++ ++SaW+ CCG032726.1 565 DAINVVACEGTRRIERPETYKQWQMRNLRNGFRQIPLHQSIINRVKSIKPDYHKD-FIVDEDGQWVLLGWKGKIFHAISAWK 645 *****************************************************77.*************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.863 | 247 | 626 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.8E-109 | 275 | 645 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 649 aa Download sequence Send to blast |
MEPPSFPNIL QAPTLGSSSD EDTAYNNDTN DFSHAVFKYI NDILMEDDLG DKTCMLQDCL 60 ALQAAEKSLY DVLGEEHPPS SDHRAPCLAQ INESPDENYT PTTSVQSSVL QSFYSPESAF 120 VVPYVHAETH SFGQLNGVTG SANKLLPYSH SVKFSSMRKA SDLPQPEEEE VADRIQKNGK 180 NYSSKQTRGN YQCDRNDYLE EGRSKKQPSV SESTHLELLD DDFLHSIESG VHISCPLYDN 240 SRSAAYNKFL HNEQLTASHM RMRTLANKRE TDLWTQLILC AEAAGRGDQK TASAKLKQIR 300 QHSSPFGDAN QRLAHYFANG LEERLAGTGM LLSGPITQNS TTAVDILNAY KLYVTICPFR 360 KMTNLCANRT IARVAVKATS VHIIDFGISY GFQWPCFIYR HSLRPGGPPK IRITGIELPQ 420 PGFRPAERVE ETGRRLQRLA DRMKVPFEYN AIAQKWETIQ YEDLKIDRDR DEVIVVNCMY 480 RFKNLPDDTM AYNSPRDAVL KLIKTINPDV FLHGVRNGSY NAPFFVTRFR EALFHYSAYF 540 DMLEANAPRE DQERLLFERE MIGRDAINVV ACEGTRRIER PETYKQWQMR NLRNGFRQIP 600 LHQSIINRVK SIKPDYHKDF IVDEDGQWVL LGWKGKIFHA ISAWKPVQE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-45 | 277 | 645 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011042724.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
TrEMBL | B9HPF5 | 0.0 | B9HPF5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s03830.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G29060.1 | 1e-170 | GRAS family protein |