PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032725.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 658aa    MW: 74826.8 Da    PI: 5.7735
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032725.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS338.31.4e-1032866562374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL++cAeav+s+d+  a +lL++++++++p gd  qR+a++f +AL+ar+a+++se+y++l++++ +   s+  l+a + f  +sP++ +s+l   
  CCG032725.1 286 RTLLIHCAEAVASNDHGSAIELLTQIRQHSTPFGDGSQRMAHCFSNALEARMAGNGSEVYAILAANRVT---SECILKACRRFISASPFMVMSNLFST 380
                  679*********************************************************999998888...899999******************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  q+I++  e + r+Hii f+i + + W +L+q L+ Rp+gpp lRiTg++ p++g  s+e++ee+g  La+++++++vpfe+n+ ++k++e+++le+L+
  CCG032725.1 381 QTIMDLSEDAARLHIINFGILYDFPWSSLIQHLSVRPGGPPVLRITGIEFPQTGyrSAETIEEIGLYLASYCDKFNVPFEYNA-ISKKWENVQLEDLK 477
                  *****************************************************9*9***************************.7************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++++E+++V++ ++  +llde+v l+ +r++vL+l+k+++P v+++   +  +ns+ F+ rf eal yys+lfd+lea  +re+ er + E+e++g+e
  CCG032725.1 478 IDRDEVTVVSSLYRFRHLLDETVVLNGHRNAVLNLIKRINPAVFIHGIVNGAYNSPFFVSRFREALFYYSSLFDMLEAITAREDPERLVFEQEVFGKE 575
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  i nv+aceg +r+er e++++W++r  +aG++++pl+e+++++++   +  + + + ++++ +++++gWk+r L+++S+W+
  CCG032725.1 576 ILNVIACEGCDRIERPEKYKQWQARNVRAGLRQLPLKEEIMEKVREQEKSSYHKDFLMDQDGQWMLQGWKGRVLFAISCWK 656
                  *************************************************999888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.561259636IPR005202Transcription factor GRAS
PfamPF035144.8E-101286656IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MNPVLKDPSA DTVLKCISQI LMEEESNEQT FSARDFSLRA AEKPFSDILD QKSSSSDSEV  60
SDPNQIIKTV STHCCNIYGC NSSETADNMV VSSFIHNREA PSVNYTVPLS LQVNSPPFFP  120
ESVFQTFPEQ VDSSVNVALG ASQLDVLFKG GTEETWEFHR QANEMILDFE NNKVTPVMAT  180
KEKSYWDHPA CELKKRKNHY KVEKKSETRR NKHSSVYAEA AEQYGMFAEV FPSSGGDDKP  240
VWLNLNETFQ NSPGMIPYLK EQSRGSNYGM LFRKNLVSCR ELVDTRTLLI HCAEAVASND  300
HGSAIELLTQ IRQHSTPFGD GSQRMAHCFS NALEARMAGN GSEVYAILAA NRVTSECILK  360
ACRRFISASP FMVMSNLFST QTIMDLSEDA ARLHIINFGI LYDFPWSSLI QHLSVRPGGP  420
PVLRITGIEF PQTGYRSAET IEEIGLYLAS YCDKFNVPFE YNAISKKWEN VQLEDLKIDR  480
DEVTVVSSLY RFRHLLDETV VLNGHRNAVL NLIKRINPAV FIHGIVNGAY NSPFFVSRFR  540
EALFYYSSLF DMLEAITARE DPERLVFEQE VFGKEILNVI ACEGCDRIER PEKYKQWQAR  600
NVRAGLRQLP LKEEIMEKVR EQEKSSYHKD FLMDQDGQWM LQGWKGRVLF AISCWKSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-442896568375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2725010.0GU272501.1 Populus balsamifera isolate FRE01 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725020.0GU272502.1 Populus balsamifera isolate FRE01 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725030.0GU272503.1 Populus balsamifera isolate GAL12 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725040.0GU272504.1 Populus balsamifera isolate GAL12 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725050.0GU272505.1 Populus balsamifera isolate GIL14 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725060.0GU272506.1 Populus balsamifera isolate GIL14 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725070.0GU272507.1 Populus balsamifera isolate GPR02 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725080.0GU272508.1 Populus balsamifera isolate GPR02 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725090.0GU272509.1 Populus balsamifera isolate INU03 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725100.0GU272510.1 Populus balsamifera isolate INU03 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725110.0GU272511.1 Populus balsamifera isolate KUU07 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725120.0GU272512.1 Populus balsamifera isolate KUU07 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725130.0GU272513.1 Populus balsamifera isolate MGR10 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725140.0GU272514.1 Populus balsamifera isolate MGR10 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725150.0GU272515.1 Populus balsamifera isolate POR11 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725160.0GU272516.1 Populus balsamifera isolate POR11 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042741.10.0PREDICTED: scarecrow-like protein 14
TrEMBLB9HPF60.0B9HPF6_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-163SCARECROW-like 14