PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG032724.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 793aa MW: 88963.8 Da PI: 4.9084

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG032724.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	370.7	2e-113	416	790	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+a+s++d++ a++lL+++++++sp gd +qRla++f+++L+arla+s++++ + ++ ++++++ ++ l+a+k+ ++P+ k+s a CCG032724.1 416 LRTLLILCAQAISANDFRTANELLKQIRQHSSPFGDGTQRLAHFFANGLEARLAGSGNGTPNFITYLASKRTTAADMLKAYKTHLRACPFKKLSIAFA 513 5789******************************************************************************************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 ++Il a+e+++++H++Df++ +G+QWp L+q+L+ p+gpp+lR+Tg++ p++g +e++ etg+rLak++e+++vpfe+n+++a+++e++ +e+L CCG032724.1 514 IKMILHAAEKATTLHVVDFGVLYGFQWPILIQQLSLLPDGPPKLRLTGIELPQHGfrPSERVVETGRRLAKYCERFKVPFEYNPIIAQNWEKIPIEDL 611 **************************************************9*************************************** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++++E+laVn+ + ++llde+v+++ +rd+vLkl+++++P+++v++ + ++n++ Fl+rf eal +s+lfd ++ +lpre++er++ Ere++g+ CCG032724.1 612 KINRNEVLAVNCLCRFKNLLDETVDVDCPRDAVLKLIRKINPDIFVHTIINGSYNAPFFLTRFREALFQFSSLFDIFDCTLPREDQERMMFEREFFGQ 709 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +++nv+aceg+er+er et+++W+ r +aGFkp+p++++ +++++ l+ ++ + + v+ +++++++gWk+r +++ S+W CCG032724.1 710 DAMNVIACEGQERVERPETYKQWQVRTVRAGFKPLPFDQELMTKVRGKLKSCYHKDFVVDVDNHWMLQGWKGRIIFASSCW 790 *************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.455	390	771	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.8E-111	416	790	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 793 aa Download sequence Send to blast
MVMDRNYTGH SDYQNDSTFD ETIMFPNSDQ YPVIELGFEF NTPSPDLSFI NLDSDPDSFG 60 LSFNLNPAGE PSVPSTSLSP DGGLLDPSTG LSPEAEASSL SEDSDSTDPL LKYISQMLME 120 ENMKDQPHMF HDHFALSATE KSLYDALGEQ YPPPLNSSQS YLNHESPDSN ISGTCSNCGD 180 NTSNGISTGT SSFTTDFSKE PQWVGGDADV GASNPSFQRT SLLGDNHLQS NLRPNMQFSV 240 SPSNGFTDSR DSLMGSSAGE MVQNMFSDME SVLQFKKGLE EASKFLPSAS QLVIDLETNA 300 FSTWKKEKTP RVVVKEEKSE SDSSPNGSRG RKNHEREDSD PEEGRSNKQS AVYVEEGELS 360 EMFDKVLLWT GEQCCGNDAD QEVGCKSLQP DEQSNGSSGG KNRAKRQNKR METVDLRTLL 420 ILCAQAISAN DFRTANELLK QIRQHSSPFG DGTQRLAHFF ANGLEARLAG SGNGTPNFIT 480 YLASKRTTAA DMLKAYKTHL RACPFKKLSI AFAIKMILHA AEKATTLHVV DFGVLYGFQW 540 PILIQQLSLL PDGPPKLRLT GIELPQHGFR PSERVVETGR RLAKYCERFK VPFEYNPIIA 600 QNWEKIPIED LKINRNEVLA VNCLCRFKNL LDETVDVDCP RDAVLKLIRK INPDIFVHTI 660 INGSYNAPFF LTRFREALFQ FSSLFDIFDC TLPREDQERM MFEREFFGQD AMNVIACEGQ 720 ERVERPETYK QWQVRTVRAG FKPLPFDQEL MTKVRGKLKS CYHKDFVVDV DNHWMLQGWK 780 GRIIFASSCW VPA

Sequence ? help Back to Top

Protein Sequence Length: 793 aa Download sequence Send to blast

MVMDRNYTGH SDYQNDSTFD ETIMFPNSDQ YPVIELGFEF NTPSPDLSFI NLDSDPDSFG  60
LSFNLNPAGE PSVPSTSLSP DGGLLDPSTG LSPEAEASSL SEDSDSTDPL LKYISQMLME  120
ENMKDQPHMF HDHFALSATE KSLYDALGEQ YPPPLNSSQS YLNHESPDSN ISGTCSNCGD  180
NTSNGISTGT SSFTTDFSKE PQWVGGDADV GASNPSFQRT SLLGDNHLQS NLRPNMQFSV  240
SPSNGFTDSR DSLMGSSAGE MVQNMFSDME SVLQFKKGLE EASKFLPSAS QLVIDLETNA  300
FSTWKKEKTP RVVVKEEKSE SDSSPNGSRG RKNHEREDSD PEEGRSNKQS AVYVEEGELS  360
EMFDKVLLWT GEQCCGNDAD QEVGCKSLQP DEQSNGSSGG KNRAKRQNKR METVDLRTLL  420
ILCAQAISAN DFRTANELLK QIRQHSSPFG DGTQRLAHFF ANGLEARLAG SGNGTPNFIT  480
YLASKRTTAA DMLKAYKTHL RACPFKKLSI AFAIKMILHA AEKATTLHVV DFGVLYGFQW  540
PILIQQLSLL PDGPPKLRLT GIELPQHGFR PSERVVETGR RLAKYCERFK VPFEYNPIIA  600
QNWEKIPIED LKINRNEVLA VNCLCRFKNL LDETVDVDCP RDAVLKLIRK INPDIFVHTI  660
INGSYNAPFF LTRFREALFQ FSSLFDIFDC TLPREDQERM MFEREFFGQD AMNVIACEGQ  720
ERVERPETYK QWQVRTVRAG FKPLPFDQEL MTKVRGKLKS CYHKDFVVDV DNHWMLQGWK  780
GRIIFASSCW VPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-45	399	792	1	379	Protein SCARECROW
5b3h_D	3e-45	399	792	1	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011042721.1	0.0	PREDICTED: scarecrow-like protein 34
Refseq	XP_011042722.1	0.0	PREDICTED: scarecrow-like protein 34
Refseq	XP_011042723.1	0.0	PREDICTED: scarecrow-like protein 34
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2K1Z230	0.0	A0A2K1Z230_POPTR; Uncharacterized protein
STRING	POPTR_0009s03800.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]