PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032723.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 759aa    MW: 85301.9 Da    PI: 4.9842
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032723.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS379.73.5e-1163877562373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++ L+ cA+avs +d + a++lL+++++++sp gd  qR+a++f++AL+arla++++++y al++ +ts    ++ l+a++++  ++P+ k++++ aN
  CCG032723.1 387 RTFLILCAQAVSVNDCRTANELLKQIRQHSSPLGDGSQRVAHCFANALEARLAGTGTQIYTALSAGKTS---AVDMLKAYQAYISACPFKKIAFIFAN 481
                  67899**********************************************************999999...9************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  + Il+ +e+++++HiiDf+i +G+QWp+L+  L++R++gpp+lRiTg++ p+sg   +e+++etg+rLak++e+ +vpfe+n+ +a++++++++++L+
  CCG032723.1 482 HSILNVAEKASTLHIIDFGILYGFQWPSLIYRLSCRSGGPPKLRITGIELPQSGfrPAERVQETGHRLAKYCERYNVPFEYNA-IAQKWDTIQIDDLK 578
                  *****************************************************9*****************************.7************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++++E+laVn+v++ ++llde+v ++s+r++vL+l+++++P+++v +  + ++n++ F++rf e+l ++salfd+l++++pre++ r k E+e+ gre
  CCG032723.1 579 IDRNEVLAVNCVFRFKNLLDETVVVNSPRNAVLNLIRKTKPDIFVQAIVNGSYNAPFFVTRFRESLFHFSALFDMLDTNMPREDKMRLKFEKEFYGRE 676
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  ++nv+aceg+er+er et+++W+ r ++aG+k++p++  + k+ k+ ++  + + + v+e+ +++++gWk+r + + SaW
  CCG032723.1 677 VMNVIACEGSERVERPETYKQWQVRNMRAGLKQLPMDPLVIKKLKCKVKAGYHEDFVVDEDGNWMLQGWKGRIVNASSAW 756
                  **************************************************99899************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.802360737IPR005202Transcription factor GRAS
PfamPF035141.2E-113387756IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MGSDSRYTEF PGSNKFEDEI VFPVSNQYQN VTNGFKIEDL DLDHLENPLV LPDPEPGNPA  60
LSSIMSMDGD SPSDDNDSEN LLKYISQMLM EENMEEKPCM FHDALALQAA ERSLYDILGE  120
KNLPSSPHES PSYGDQFLVD SPDDNFWSSR IDYSSNSSST SNTASLVDPQ WNGESGESKP  180
SFMQMPLSTN FVFQSAANPS SQSSFKLHNG FASNSDSAIK PSVGNIVVQN IFSDGDLALQ  240
FKRGVEEASK FLPKGNPLVI DLENSSLAPE MNRNAPNLVV KAEKEDKEYL PEWLTGKKNH  300
EREDGDFEEE RSNKQSAVYV EESELSEMFD VLLGVGDGCQ PRQCALHDAE QRESGKTLQQ  360
DGQTRGTNGS KTRAKRQENN KEVVDLRTFL ILCAQAVSVN DCRTANELLK QIRQHSSPLG  420
DGSQRVAHCF ANALEARLAG TGTQIYTALS AGKTSAVDML KAYQAYISAC PFKKIAFIFA  480
NHSILNVAEK ASTLHIIDFG ILYGFQWPSL IYRLSCRSGG PPKLRITGIE LPQSGFRPAE  540
RVQETGHRLA KYCERYNVPF EYNAIAQKWD TIQIDDLKID RNEVLAVNCV FRFKNLLDET  600
VVVNSPRNAV LNLIRKTKPD IFVQAIVNGS YNAPFFVTRF RESLFHFSAL FDMLDTNMPR  660
EDKMRLKFEK EFYGREVMNV IACEGSERVE RPETYKQWQV RNMRAGLKQL PMDPLVIKKL  720
KCKVKAGYHE DFVVDEDGNW MLQGWKGRIV NASSAWIPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-513697581379Protein SCARECROW
5b3h_D6e-513697581379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042719.10.0PREDICTED: scarecrow-like protein 14
RefseqXP_011042720.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2K1Z2340.0A0A2K1Z234_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]